The healthcare system in the Gaza Strip has been severely compromised by prolonged conflict, infrastructure degradation, and resource limitations. Interdependent systems—water, sanitation, energy, and transport—are critical for effective healthcare delivery, yet their collapse has amplified public health crises. This study evaluates optimal strategies for rebuilding Gaza’s healthcare system and related infrastructure to improve population health outcomes. A retrospective quantitative approach was employed using data from the World Health Organization (WHO), verified local sources, and media reports. Hospital functionality, health workforce availability, medical supply continuity, and infrastructure status were assessed. Infectious disease incidence was analyzed relative to system disruptions using Spearman’s rank correlation. Healthcare system recovery was modeled with Success Tree Analysis (STA), and potential interventions were evaluated via Multi-Criteria Decision Analysis (MCDA). Of 38 hospitals assessed, only 23.7% were fully functional, with North Gaza experiencing 50% non-functional facilities. Physicians per 10,000 population declined by 45%, and only 48% of facilities had essential medicines. Electricity and water system functionality were 27% and 35%, respectively, contributing to high diarrheal disease (72.4/10,000) and respiratory infection (96.5/10,000) rates. Strong correlations were observed between infrastructure and health outcomes, including electricity vs. hospital functionality (ρ = 0.82) and water supply vs. diarrheal disease (ρ = –0.76). STA modeling indicated that integrated recovery of energy, water, and workforce could restore up to 89% of hospital functionality within five months. MCDA ranked rapid infrastructure repair, renewable energy integration, and water network rehabilitation as top strategies. The findings highlight that Gaza’s healthcare system requires coordinated, multi-sectoral interventions and spatially targeted strategies to ensure equitable access, strengthen resilience, and improve population health in conflict-affected settings.