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Prediction of Reliable Channel Connectivity in URLLC Scenario Base on RSS Measurement
Hui Ren
Xi Wang

Hui Ren

and 1 more

July 03, 2023
Applying high-reliability and low-latency scenarios of the fifth-generation mobile communication technology (5G) to large-capacity and low-latency services in the power system requires meeting the communication reliability requirements specified by the power system. However, reliability metrics based on packet loss rate fail to capture the time-dependent characteristic of time-varying wireless channels and the healthy transmission duration required for different ultra-reliable and low-latency communication (URLLC) services. Therefore, to analyze the performance of channels within a given time interval, this study employs survival analysis methods to combine URLLC key technologies with failure rate functions in reliability theory. By utilizing the received signal strength (RSS), theoretical distribution models and data-driven models are established to predict the channel reliability within the next subframe. A case study is conducted by using of the UMa-NLOS-CDL channel model to compare and analyze the proposed methods. Furthermore, considering different rain fading conditions, the reliability of multiple-input multiple-output (MIMO) and multiple-input single-output (MISO) channel systems is compared and analyzed
The Effect of Transcranial Direct Current Stimulation on Rating of Perceived Exertion...
Hamzeh Baharlouei
Meysam  Gooshe

Hamzeh Baharlouei

and 5 more

July 02, 2023
Introduction: The rating of perceived exertion (RPE) is a widely used method for monitoring the load during training, as it provides insight into the subjective intensity of effort experienced during exercises. Considering the role of brain in monitoring and perception of the effort, several studies explored the effect of transcranial direct current stimulation (tDCS) on RPE in different populations. The aim of current study is to review the studies investigated the effect of tDCS on RPE in three groups including healthy untrained people, physically active persons and athletes. Method: Nine databases were searched for papers assessing the effect of tDCS on RPE. The data of included studies were extracted and methodological quality examined using the risk of bias 2 (ROB2) tool. Thirty-three studies met the inclusion criteria. Results: According to the meta-analysis, active a-tDCS significantly decreased the RPE compared to the sham-stimulation. The a-tDCS could decrease the RPE when it was applied over M1 or DLPF. Regarding the measurement tool, Borg’s scale 6-20 and OMNI scale could show an improvement in RPE scale. Conclusion: A-tDCS is a promising technique that can decrease improve the RPE. M1 and DLPFC are suggested as the target area of stimulation. From the tools that measure the RPE, Borg’s RPE 6-20 and OMNI scale could better show the effect of a-tDCS.
The wild tending framework of medicinal plants constructed based on Biomod2 and PLUS...
Boyan Zhang
Bingrui Chen

Boyan Zhang

and 6 more

July 02, 2023
Wild medicinal plants dominate the market of Traditonal Chinese Medicine (TCM). However, the intensification of human activities and ecological deterioration have caused a gradual depletion or extinction of wild medicinal plant resources in China. Scientific planning of wild tending areas is a priority to realize the sustainable utilization of wild medicinal plant resources. Thesium chinense, a known “plant antibiotic”, has been overharvested in recent years, resulting in a sharp reduction in its wild resources. In this study, we combined three atmospheric circulation models and four common socio-economic approaches (SSP1-2.6, SSP2-4.5, SSP3-7.0, and SSP5-8.5) to explore the main environmental factors affecting the distribution of T. chinense and the changes in the suitable area under the complete niche based on the Biomod2 package. The PLUS model was used to predict and analyze the land use change trend in the climate-stable areas of T. chinense in the future. And the wild tending areas of T. chinense were planned using ZONATION software. In the next hundred years, the climate-stable areas of T. chinense in China will mainly be distributed in humid and subhumid area, and the natural habitat areas of T. chinense in this region will decrease year by year. Hot spot analysis showed that Qiqihar, Chifeng, Zunyi, and other counties were the most suitable for the wild tending of T. chinense. These results can provide a comprehensive research framework for wild tending planning of T. chinense and other medicinal plants.
Patient-reported outcome measures in early psychosis: Evaluating the psychometric pro...
Neha Nair
Aarati Taksal

Neha Nair

and 7 more

July 02, 2023
Aim: Patient-reported outcome measures (PROMs) provide valuable information and promote shared decision-making but are infrequently used in psychosis. Self-Rated Health (SRH) and Self-Rated Mental Health (SRMH) are single-item PROMs in which respondents rate their health and mental health from ‘poor’ to ‘excellent’. We examined the psychometric properties of the SRH and SRMH in early intervention for psychosis contexts in Chennai, India and Montreal, Canada. Methods: Assessments were completed in Tamil/English in Chennai and French/English in Montreal. Test-retest reliability included data from 59 patients in Chennai and Montreal. Criterion validity was examined against clinician-rated measures of depression, anxiety, positive and negative symptoms, and a quality-of-life PROM for 261 patients in Chennai and Montreal. Results: SRH and SRMH had good to excellent test-retest reliability (ICC>0.63) at both sites and in English and Tamil (but not French). Results for criterion validity were mixed. Whereas in Montreal, low SRH was associated with not being in positive symptom remission, and poorer functioning and quality of life, SRH was associated only with functioning in Chennai. No associations were found for SRMH in Montreal. In Chennai, however, low SRMH was associated with not being in positive symptom remission and poorer functioning. Conclusions: Our work advances knowledge of more feasibly integrating single-item PROMs into clinical settings. Importantly, it highlights how PROMs may perform differently across languages and contexts. More critical work is needed to understand if discrepancies between PROMs and CROMs are indicative of poor validity of PROMs or “valid” differences between patient and clinician perceptions.
Performance During Object Retrieval Tasks in Young Children with and without Down Syn...
Maninderjit Kaur
Amy Needham

Maninderjit Kaur

and 1 more

July 01, 2023
Object retrieval skills requiring means-end exploration are delayed or impaired in infants with Down Syndrome (DS). The current study examined the role of ecological constraints, i.e., task difficulty and environmental context on the object retrieval skills of young children with DS. Thirteen children with DS (31.55 ± 4.14 months) and 13 mental-age matched Typically Developing (TD) children (17.31 ± 1.64 months) completed three tasks involving retrieving a toy from a transparent box (task 1), an opaque box (task 2), and a transparent box hidden inside an opaque box (task 3). Both DS and TD group performed similarly for the simpler task 1; but for task 2 and task 3, the DS group had less success rate, fewer use of complex asymmetric hand actions, and/or longer planning and execution times compared to TD group. Future studies should examine the developmental trends and specificity of means-ends exploratory behaviors in children with DS.
Microfluidics-A novel technique for high quality sperm selection for greater ART outc...
Gh Rasool Bhat
Farooz Ahmad Lone

Gh Rasool Bhat

and 1 more

July 01, 2023
Microfluidics represent a quality sperm selection technique. Human couples fail to conceive and this is so in a significant population of animals worldwide. Male/sperm contributes a lot to infertility, so are outcomes of assisted reproduction affected by sperm. Microfluidics, deals with minute volumes of liquids run in small scale microchannel networks in the form of laminar flow streamlines. Microfluidic sperm selection designs have been developed in chip formats, mimicking in vivo situations. Here sperms are selected and analyzed on the basis of motility and sperm behavioral properties. Compared to conventional sperm selection methods, this selection method enables to: produce high quality motile sperm cells possessing non-damaged or least damaged DNA, achieve greater success of insemination in bovines and achieve enhanced pregnancy rates and live births in assisted reproduction-In Vitro Fertilization (IVF) and Intra Cytoplasmic Sperm Injection (ICSI). Besides, the concentration of sperm available to oocyte can be controlled by regulating the flow rate in microfluidic chips. The challenges in this technology are: commercialization of chips, development of fully functional species-specific microfluidic tools, limited number of studies available in literature and need of more understanding in reproductive physiology across species for domestic animals. In conclusion, microfluidics in assisted reproduction are great advances having advantages for quality sperm selection. Future directions to make this technology superior may need to modify chip designs to formulate species specific low-cost chips for commercialization. Comprehensive studies in animal species need to be carried out for wider application of microfluidic sperm selection in invitro procedures.
Endoglin ER-retained mutants exacerbate loss of function in hereditary hemorrhagic te...
Bassam R. Ali
Nesrin Gariballa

Bassam R. Ali

and 1 more

July 01, 2023
Hereditary hemorrhagic telangiectasia (HHT) is an autosomal dominant disorder affecting 1 in 5,000-8,000 individuals. Hereditary hemorrhagic telangiectasia type 1 (HHT1) is the most common HHT and manifests as diverse vascular malformations ranging from mild symptoms such as epistaxis and mucosal and cutaneous telangiectases to severe arteriovenous malformations (AVMs) in the lungs, brain or liver. HHT1 is caused by heterozygous mutations in the ENG gene, which encodes endoglin, the TGFb homodimeric coreceptor. It was previously shown that some endoglin HHT1-causing variants failed to traffic to the plasma membrane due to their retention in the endoplasmic reticulum (ER) and consequent degradation by ER-associated degradation (ERAD). Endoglin is a homodimer formed in the ER, and we therefore hypothesized that mixed heterodimers might form between ER-retained variants and WT protein, thus hampering its maturation and trafficking to the plasma membrane causing dominant negative effects. Indeed, HA-tagged ER-retained mutants formed heterodimers with Myc-tagged WT Endoglin. Moreover, variants L32R, V105D, P165L, I271N and C363Y adversely affected the trafficking of WT endoglin by reducing its maturation and plasma membrane localization. These results strongly suggest dominant negative effects exerted by these ER-retained variants aggravating endoglin loss of function in patients expressing them in the heterozygous state with the WT allele. Moreover, this study may explain some of the variability observed among HHT1 patients due to the additional loss of function exerted by the dominant negative effects in addition to that due to haploinsufficiency. These findings might also have implications for some of the many conditions impacted by ERAD.
Unveiling the Abundance and Composition of Rhizobacterial Communities Associated with...
Kratika  Nigam
Shital Padhiyar

Kratika Nigam

and 6 more

July 01, 2023
Halophytes are a group of plants that possess the ability to withstand a broad range of salinity levels, extending even beyond the concentration found in seawater. Soil salinity can indirectly impact plant development but this effect can be minimized by the activities of beneficial bacteria residing in the rhizosphere of halophytic plants. This research undertaking employed next-generation sequencing technology to examine the rhizobacteria associated with the roots of five distinct halophytic plant species. By utilizing 16S rRNA gene amplification, the findings unveiled the prevalence of bacterial members belonging to the phyla Proteobacteria, Actinobacteria, Bacteroidetes, Igvanibacteriae, Chloroflexi, Nitrospirae, Cyanobacteria, and Firmicutes, with Proteobacteria being the most abundant phylum. Furthermore, a comparative analysis was conducted to explore the existence of diverse bacterial communities associated with halophytic plants at the species, genus, and family levels. This study conducted in the Saurashtra region of Gujarat offers valuable insights into the species that contribute to the maintenance of biogeochemical cycles within the ecosystem. Additionally, it facilitates the identification of plant growth-promoting, halotolerant bacteria, which can potentially enhance the salinity tolerance of non-halophytic crops. Notably, this study represents the first metagenomic investigation conducted on the rhizosphere of any halophytic plant species from the Gujarat region of India.
Exposure to micro- and nanoplastics and human reproductive outcomes: a systematic rev...
Kathryn Hunt
Anna Davies

Kathryn Hunt

and 7 more

July 01, 2023
Background: Micro- and nanoplastics are novel pollutants which have been detected in human tissues including placenta and fetal meconium. However, their association with adverse fertility or pregnancy outcomes in humans is not known. Objectives: To synthesise evidence for the presence of micro- and nanoplastics in human reproductive tissue and their associations with environmental exposures and reproductive outcomes. Search Strategy: Medline, Embase, Emcare, CINAHL, ClinicalTrials.gov and ICTRP were searched from inception to 03/02/2023. Selection Criteria: Studies of human participants, assessing presence of micro- and nanoplastics in reproductive tissues, environmental exposures to micro- and nanoplastics, and fertility or pregnancy-related outcomes. Data Collection and Analysis: Two independent reviewers selected studies and extracted data on study characteristics, microplastics detected, environmental exposures, reproductive outcomes, and risk of bias. Narrative synthesis was performed due to methodological heterogeneity. Main Results: Of 1094 citations, seven studies were included, covering 96 participants. Microplastics were detected in 68 out of 96 placentas examined across all studies, and in all 14 meconium samples. Two studies reported associations between lifestyle factors (daily water intake, use of scrub cleanser or toothpaste, bottled water and takeaway food) and placental microplastics. One study reported associations between meconium microplastics and microbiota diversity and composition. One reported placental microplastics levels correlated with reduced birth weights and 1-minute Apgar scores. All studies had a very high risk of bias. Conclusions: There is a need for high-quality observational studies to assess the effects of microplastics on human reproductive health. Funding: None received Keywords: microplastics, nanoplastics, pregnancy, fertility, environmental pollution
Establishing Surrogate markers by Consensus for Antepartum and Intrapartum Stillbirth...
Sanne Gordijn
Aris Papageorghiou

Sanne Gordijn

and 4 more

July 01, 2023
Intervention bias refers to a systematic difference in management or variable exposure among subjects in studies, which can significantly influence outcomes.
Altered sphingolipid hydrolase activities and alpha-synuclein level in late-onset sch...
Tatiana Usenko
Anastasia Bezrukova

Tatiana Usenko

and 25 more

July 01, 2023
Last data described that patients with lysosomal storage disorders (LSDs) may have clinical schizophrenia (SCZ). The lysosomal dysfunction in SCZ pathogenesis, in particularly, due to the critical role of lysosomal function for neuronal cells could be proposed. The current study focused on the estimation of lysosomal enzyme activities and alpha-synuclein level in blood cells of patients with late-onset SCZ. 52 SCZ patients with late-onset SCZ, 180 sporadic Parkinson’s disease (sPD) patients, 176 controls were recruited. The enzymatic activity of enzymes associated with mucopolysaccharidosis (alpha-L-Iduronidase (IDUA)), glycogenosis (acid alpha-glucosidase (GAA)) and sphingolipidosis (galactosylceramidase (GALC), glucocerebrosidase (GCase), alpha-galactosidase (GLA), acid sphingomyelinase (ASMase)) was measured by LC-MS/MS in blood. Alpha-synuclein level was estimated in magnetically separated CD45+ blood cells by the enzyme-linked immunosorbent assay (ELISA). NGS analysis of 11 LSDs genes was conducted in 21 early-onset SCZ patients and 23 controls using the gene panel PGRNseq-NDD. Decreased ASMase and increased GLA activities and increased alpha-synuclein level were observed in late-onset SCZ patients in comparison to controls (p<0.05). 4 rare deleterious variants among LSDs genes causing mucopolysaccharidosis type I (IDUA (rs532731688, rs74385837) and type III (HGSNAT (rs766835582)) and sphingolipidosis (metachromatic leukodystrophy (ARSA (rs201251634)) were identified in five patients from group of early-onset SCZ but not in controls. Our findings supported the role of sphingolipid metabolism in SCZ pathogenesis. Aberrant enzyme activities and compound of sphingolipids associated with ceramide metabolism may lead to accumulation of alpha-synuclein and be a critical in SCZ.
Strategies and a checklist for increasing diversity, equity and inclusion in your jou...
Michael Willis
Megan Carey

Michael Willis

and 5 more

July 01, 2023
A document by Michael Willis. Click on the document to view its contents.
Zinc-Tin-Oxide Composite Films as an Alternate Electron Transport Layer in Perovskite...
Ramarajan Ramanathan
Ranjith Kumar Poobalan

Ramarajan Ramanathan

and 5 more

June 30, 2023
Enhancing the performance of perovskite solar cells (PSCs) is one of the prime concerns of researchers worldwide. For PSC devices, it is essential to develop the individual layer efficiently and cost-effectively. This work emphasizes the possibility of employing Zn-Sn oxide-based composite materials as an alternative electron transport layer (ETL) in PSC devices. Pristine Zn 2SnO 4 (ZTO), composite ZTO-ZnO, and ZTO-SnO 2 heterostructure-based ETL were prepared by simple solid-state calcination technique and proposed as an alternative for the TiO 2 photoanode used in the PSC devices. The power conversion efficiency of the designed PSC was studied based on crystallinity, morphology, cross-section, roughness, contact angle, work function, and Raman analysis of the ETL material. TEM analysis confirms the phase pure ZTO and heterostructure formation as a function of material stoichiometry. Compared to the pristine ZTO, the ZTO-ZnO and ZTO-SnO 2 composites have an enhanced PSC performance. The ZTO-SnO 2 composites exhibit better band matching and charge transfer behavior with the perovskite layer than the pristine ZTO and ZTO-ZnO composites. ZTO-SnO 2 ETL-based PSC device displays a maximum efficiency of 15.6 %, while ZTO-ZnO shows a maximum efficiency of 13.1 %, which is more than 10.5 % for the pristine ZTO. The results indicate that Zn 2SnO 4-based composites can be suitable for ETL in PSC device fabrication.
The Effects of Thymoquinone and Vibration Forces on Rapid Palatal Expansion Relapse i...
Dr. Özge Özdal Zincir
Dr. Aylin Paşaoğlu Bozkurt

Dr. Özge Özdal Zincir

and 2 more

June 30, 2023
Objective: The rapid palatal expansion (RPE) procedure is a frequently used treatment for malocclusion before pubertal growth. However, relapses often occur after the retention period of this procedure. In this study, we aimed to eliminate this deficiency, considering that there would be a deficiency in the new bone metabolism in the expanded area between the palatal sutures. Design: Twenty-four male Wistar rats, 7-8 weeks old, with an average weight of 200 g, were divided into 3 groups in equal numbers. 5 days of expansion was applied to all groups with 50 g of force, then a retention period of 12 days was expected. While no application was made to the control group (CG) during the retention period, mechanical vibration was applied to the vibration group (VF) at a frequency of 111 Hz and the active substance was applied to the thymoquinone group (TQ) at a dose of 10 mg/kg. Result: At the end of the retention period, all animals were sacrificed and sections were taken from the premaxillary region and histological evaluation was made in terms of osteoblast, osteoclast, capillary numbers, amount of mineralized and fibrous areas. According to the statistical analysis, TQ and VF showed more positive and similar results than CG in terms of new bone formation for all histomorphometric parameters except osteoclast numbers in the comparison of parameters in all groups (p<0.05). Conclusions: The new bone stimulation effects of non-invasive vibration force and Thymoquinone applications and ease of use can prevent relapse in the RPE.
Increasing prey availability reduces early intraguild predation and improves biologic...
Pedro Branco Leote
Oskar Rennstam Rubbmark

Pedro Branco Leote

and 2 more

June 30, 2023
Intraguild predation is an extreme form of competition, that depends on resource availability, niche overlap, behaviour and diversity. However, despite modelling and mesocosm experiments, field studies are scarce, and we know nothing of its temporal dynamics within real-world food webs, particularly in the context of biological control. To address this, we manipulated decomposer prey by adding manure to cereal fields, and analysed the diet of over 6000 predators over the entire cropping season during two years. Our results show that manure increased alternative prey, reduced intraguild predation and pest spreading in the first half of the season, without changing predator communities' diversity or evenness across treatments. We hypothesize the mechanism responsible for the observed effects are changes in predator behaviour. Our insights were possible due the high temporal resolution of our data, hence we recommend it as a way to address knowledge gaps in food webs, competition and biological control.
CRISPR-Cas systems in oral bacteria and their role in periodontal disease pathogenesi...
Aditi Chopra
Geeta Bhuvangiri

Aditi Chopra

and 2 more

June 30, 2023
‘Clustered Regularly Interspaced Short Palindromic Repeats’ (CRISPRs) are DNA sequences that can remove, edit or manipulate a genome sequence by either activating or inhibiting a specific gene sequence in the host. CRISPR along with Cas genes forms the CRISPR-Cas systems. CRISPR-Cas are found in many oral bacteria, whereby they influence the physiology, metabolism, and defense of the bacteria. CRISPR-Cas-gene produces specific endonucleases that act like molecular scissors, that are capable of excising a DNA strand. Oral microbes utilize CRISPR-Cas systems for acquiring nutrients, communication (quorum sensing), invasion, evading the host immune response, horizontal gene transfers, biofilm formation, and antimicrobial resistance. CRISPR-Cas genes play a crucial role in the pathogenesis of periodontal diseases as they can modulate the host immune and inflammation response. This revolutionary technology can be employed in precision periodontal therapy. This review aims to discuss the types of CRISPR genes in oral microbiota, their mechanisms, and how they can be employed for managing periodontal disease pathogenicity and periodontal therapy.
Detection: A convolutional network method for plant disease recognition
Enow Takang Achuo Albert

Enow Takang Achuo Albert

and 2 more

July 03, 2023
1. INTRODUCTIONThe continuous pursuit of better image classification AI models is crucial for several reasons. (1) Improved Accuracy: The primary goal of developing better models is to improve accuracy. Higher accuracy means the model can correctly classify more images, which is beneficial in many applications, including plant disease recognition. For instance, a more accurate model could lead to earlier detection of diseases [1]. (2) Efficiency: Better models can also be more efficient, requiring less computational resources or less time to train or make predictions. This is particularly important in real-time applications, such as image/video processing or in devices with limited computational power [2]. (3) Robustness: Improved models can be more robust to variations in the input data, such as changes in lighting, viewpoint, or scale. This is crucial for many real-world applications where these conditions can’t be controlled [3]. (4) Generalization: Better models can generalize more effectively to new, unseen data. This is important because a model’s ultimate purpose is to make accurate predictions on new data, not just the data it was trained on [4]. (5) Interpretability: As AI models are increasingly used in decision-making, it’s important that they’re interpretable, meaning that their predictions can be understood and explained by humans. Better models can provide more interpretable predictions, increasing trust and acceptance of AI systems [5]. (6) Fairness: Improved models can also be designed to be fairer, reducing bias in their predictions. This is particularly important in applications where biased predictions can have serious consequences [6]. Further to the foregoing, we set out to present an improved feature extraction ConvNet for better plant disease recognition (calledDetection ).
Prediction of protein interactions is essential for studying biomolecular mechanisms
Ilya Vakser

Ilya Vakser

June 30, 2023
Structural characterization of protein interactions is essential for our ability to understand and modulate physiological processes. Computational approaches to modeling of protein complexes provide structural information that far exceeds capabilities of the existing experimental techniques. Protein structure prediction in general, and prediction of protein interactions in particular, has been revolutionized by the rapid progress in Deep Learning techniques. The work of Schweke et al. presents a community-wide study of an important problem of distinguishing physiological protein-protein complexes/interfaces (experimentally determined or modeled) from non-physiological ones. The authors designed and generated a large benchmark set of physiological and non-physiological homodimeric complexes, and evaluated a large set of scoring functions, as well as AlphaFold predictions, on their ability to discriminate the non-physiological interfaces. The problem of separating physiological interfaces from non-physiological ones is very difficult, largely due to the lack of a clear distinction between the two categories in a crowded environment inside a living cell. Still, the ability to identify key physiologically significant interfaces in the variety of possible configurations of a protein-protein complex is important. The study presents a major data resource and methodological development in this important direction for molecular and cellular biology.
Proteomics analysis of C2C12 myotubes treated with atrophy inducing cancer cell-deriv...
Akbar  Marzan
Sai Chitti

Akbar Marzan

and 5 more

June 30, 2023
Cancer-associated cachexia is a wasting syndrome that results in dramatic loss of whole-body weight, predominantly due to loss of skeletal muscle mass. It has been established that cachexia inducing cancer cells secrete proteins and extracellular vesicles (EVs) that can induce muscle atrophy. Though several studies examined these cancer-cell derived factors, targeting some of these components have shown little or no clinical benefit. To develop new therapies, understanding of the dysregulated proteins and signalling pathways that regulate catabolic gene expression during muscle wasting is essential. Here, we sought to examine the effect of conditioned media (CM) that contain secreted factors and EVs from cachexia inducing C26 colon cancer cells on C2C12 myotubes using mass spectrometry-based label-free quantitative proteomics. We identified significant changes in the protein profile of C2C12 cells upon exposure to C26-derived CM. Functional enrichment analysis revealed enrichment of proteins associated with inflammation, mitochondrial dysfunction, muscle catabolism, ROS production, and ER stress in CM treated myotubes. Furthermore, strong downregulation in muscle structural integrity and development and/or regenerative pathways were observed. Together, these enriched proteins in atrophied muscle could be utilized as potential muscle wasting markers and the dysregulated biological processes could be employed for therapeutic benefit in cancer-induced muscle wasting.
Plant roots link stronger with microorganisms in leaf litter rather than soil across...
Zheng Zhou
Jing-Zhong Lu

Zheng Zhou

and 5 more

June 30, 2023
Tropical soil microorganisms are major recyclers of biosphere organic carbon. However, the link of tropical microorganisms to the two primary carbon inputs (roots and litter) remains unclear. Here, we studied the effects of excluding living roots and litter on microorganisms in leaf litter and topsoil in rainforests and plantations in Sumatra, Indonesia. Unexpectedly, excluding living roots strongly decreased microbial biomass and basal respiration in litter but not in soil, indicating that tropical trees prioritize mining for nutrients in litter layer rather than mineral soil. Contrary to litter, soil microbial communities were predominantly influenced by long-term factors related to land-use history. Litter removal neither significantly affected microbial biomass nor community structure in soil, suggesting compartmentalized carbon processing between litter and soil. Our study sheds new light on fundamental-ecosystem processes in the tropics and calls for greater consideration of the litter layer and for including root-derived resources in global carbon cycling models.
Pace and parity predict short-term persistence of small plant populations.
Michelle DePrenger-Levin
Michael Wunder

Michelle DePrenger-Levin

and 1 more

June 30, 2023
Life history traits are used to predict asymptotic extinction risk from dynamic conditions. Less is known about how life history traits interact with stochasticity and population structure of finite populations to predict near-term extinction risk. Through empirically parameterized matrix population models, we study the impact of life history (reproduction, pace), stochasticity (environmental, demographic), and population history (existing, novel) on the near-term population dynamics of finite populations of plant species. Among fast and slow pace and either uniform or increasing reproductive intensity or short or long reproductive stage duration, slow, semelparous species are at the greatest risk of extinction. Long reproductive stages buffer existing populations from extinction while extinction risk of novel populations decrease when reproductive effort is uniformly spread across the reproductive stage. Our study highlights the importance of population structure, pace, and two distinct aspects of parity for predicting near-term extinction risk.
Microscopy and spectroscopy approaches to study GPCR structure and function
Tomas Fessl
Maria Majellaro

Tomas Fessl

and 2 more

June 30, 2023
The GPCR signalling cascade is a key pathway responsible for the signal transduction of a multitude of physical and chemical stimuli, including light, odorants, neurotransmitters, and hormones. Understanding the structural and functional properties of the GPCR cascade requires direct observation of signalling processes in high spatial and temporal resolution with minimal perturbation to endogenous systems. Optical microscopy and spectroscopy techniques are uniquely suited to this purpose because they excel at multiple spatial and temporal scales and can be used in living objects. Here, we review recent developments in microscopy and spectroscopy technologies which enable new insights into GPCR signalling. We focus on advanced techniques with high spatial and temporal resolution, single-molecule methods, labelling strategies, and approaches suitable for endogenous systems and large living objects. This review aims to assist researchers in choosing appropriate microscopy and spectroscopy approaches for a variety of applications in the study of cellular signalling.
Sharing space between native and invasive small mammals: Study of commensal communiti...
Laurent Granjon
Emmanuelle Artige

Laurent Granjon

and 15 more

June 30, 2023
Urbanization processes are taking place at a very high rate, especially in Africa, these. At the same time, a number of small mammal species, be they native of invasive, take advantage of these human-induced habitat modifications. They represent commensal communities of organisms that cause a number of inconveniences to humans, including as potential reservoirs of zoonotic diseases. We studied via live trapping and habitat characterization such commensal small mammal communities in small villages to large cities of Senegal, to try understand how the species share this particular space. Seven major species were recorded, with exotic invasive house mice (Mus musculus) and black rats (Rattus rattus) dominating in numbers. The shrew Crocidura olivieri appeared as the main and more widespread native species, while native rodent species (Mastomys natalensis, M. erythroleucus, Arvicanthis niloticus and Praomys daltoni) were less abundant and/or more localized. Habitat preferences, compared between species in terms of room types and characteristics, showed differences between house mice, black rats and M. natalensis especially. Niche (habitat component) breadth and overlap were measured. Among invasive species, the house mouse showed a larger niche breadth than the black rat, and overall, all species displayed high overlap values. Co-occurrence patterns were studied at the locality and local scales. The latter show cases of aggregation (between the black rat and native species, for instance) and of segregation (as between the house mouse and the black rat in Tambacounda, or between the black rat and M. natalensis in Kédougou). While updating information on commensal small mammal distribution in Senegal, a country submitted to a dynamic process of invasion by the black rat and the house mouse, we bring original information on how species occupy and share the commensal space, and make predictions on the evolution of these communities in a period of ever-accelerating global changes.
Serum metabolomic phenotyping for diagnosis and prognosis of Hepatocellular Carcinoma
Yang Du
Dai-Yang Zhu

Yang Du

and 3 more

June 30, 2023
This study investigated the disparities in the metabolite profiles of serum samples obtained from individuals with hepatocellular carcinoma (HCC) and those without the disease, with the objective of identifying potential biomarkers and elucidating the underlying pathogenesis pathways in this particular type of cancer. Serum samples were collected from a cohort of HCC patients (n = 40) as well as from a group of healthy controls (n = 40). By employing various analytical techniques including principal component analysis (PCA), partial least squares discrimination analysis (PLS-DA), orthogonal partial least square discriminant analysis (OPLS-DA), t-tests, and the volcano plot, an aberrant metabolic pathway model specific to HCC was developed. Results from PCA, PLS-DA, and OPLS-DA analyses demonstrated noticeable distinctions in the serum metabolic profiles between the HCC and control groups. The OPLS-Loading plot analysis, in conjunction with criteria such as Variable importance in the projection (VIP) > 1, Fold change (FC) > 1.5, and p < 0.05, facilitated the identification of 83 potential metabolite candidates. Among these candidates, 37 metabolites, namely vitamin D23 3-glucuronic acid, acetoacetic acid, L-glutamic acid, glycine, LysoPC (24:0/0:0), and cholesterol fatty acid ester (17:1), were found to be upregulated in the HCC group. Conversely, retinoylβ-glucuronic acid, LYSOPC (18:1 (11Z)/0:0), LYSOPC (16:0/0:0), glycerol phosphocholine, L-histidine, alanine, and lactose exhibited downregulation in the HCC group. Furthermore, the differential metabolites were associated with 11 abnormal metabolic pathways that potentially contribute to the pathophysiology of HCC. Notably, six metabolites displayed an area under the receiver operating curve (AUC) of >0.9, namely Alpha-Lactose, Glycine, LysoPE (18:0/0:0), PS (18:1(9Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)), PS (18:3(9Z,12Z,15Z)/18:1(9Z)), and PS (20:4(5Z,8Z,11Z,14Z)/18:0). The levels of these metabolites may serve as potential discriminatory factors between HCC patients and healthy controls. Additionally, D-Glutamine and D-glutamate metabolism, Alanine, aspartate, and glutamate metabolism, as well as serine metabolism were identified as relevant mechanisms underlying HCC.
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