Progress of global warming poses a great risk to river systems. However, how river heatwaves’ characteristics change under climate change is still poorly understood. In this study, long-term reconstructed daily river water temperatures (RWT) from 125 hydrological stations in 70 rivers across Poland, were used. Bayesian estimator of abrupt change, seasonal change, and trend (BEAST) method was used to track the abrupt changes of RWT. BEAST analysis reveals significant temporal and spatial variability in river temperature trends in Poland, influenced by natural and anthropogenic factors. Notably, the 1980s and 1990s saw maximum abrupt changes. Southern Poland, particularly mountainous regions, exhibits more pronounced temperature changes and severe heatwaves compared to the milder northern regions. Moreover, the characteristics of river heatwaves, including number, duration, intensity, and category, were evaluated. The results showed that 121 out of 125 stations showed significantly increased frequency and intensity of river heatwaves. For all the 125 hydrological stations, the majority of river heatwaves belong to the category ‘moderate’, followed by ‘strong’, ‘severe’, and then ‘extreme’. Characteristics of river heatwaves correlated with air temperatures. The average correlation coefficients of 0.624, 0.631, and 0.604 were for the number, duration and cumulative intensity respectively. The results indicated that with the warming of air temperatures, river heatwaves tend to increase in frequency and intensity. In addition, river heatwaves tend to intensify under low flow conditions. The results further suggest that mitigation measures shall be taken to reduce the effects of climate warming on river systems.