Reductive soil disinfestation (RSD) is an environmentally friendly and effective approach for controlling a wide range of soil-borne pathogens. The application of organic matter is crucial for the success of RSD. This study utilized greenhouse soil to grow cucumber for three consecutive years and added tomato straw, bitter melon straw, and pepper straw as organic matter for the RSD treatment. The soil properties, enzyme activity, and microbial community were analyzed after the soil treatment and cucumber planting. In addition, the growth, development, and yield of cucumber after planting were studied. The results showed that the soil pH; SOM, AN, and AK contents; and SC, UE, and CAT activities increased after the soil treatment and cucumber planting. PCoA analyses showed that the bacterial and fungal community compositions were greatly altered and that the fungal and bacterial Chao1 and Shannon indices decreased after the soil treatments and cucumber planting. After the RSD treatment and cucumber planting, the relative abundance of beneficial microorganisms such as Bacillus, Arthrobacter, Streptomyces, and Penicillium increased, while the relative abundance of harmful microorganisms such as Fusarium decreased. Importantly, compared with the qCK treatment, the cucumber yield of the qTS, qBS, and qPS treatments increased significantly by 14.90%, 11.85%, and 17.59%, respectively. The yield of cucumber was positively correlated with pH; the SOM, AN, and AK contents; the SC, UE, and CAT activities; and the relative abundance of Bacillus, Terrabacter, Chujaibacter, Aspergillus, Penicillium, and Mortierella in the soil and negatively correlated with AP content, and the relative abundance of Fusarium and Pseudallescheria. Based on their effects on the soil properties and the growth and development of continuous cucumber, the different vegetable straws added to the RSD treatments ranked as follows: pepper straw > tomato straw > bitter melon straw.