AUTHOREA
Log in Sign Up Browse Preprints
LOG IN SIGN UP

Preprints

Explore 66,105 preprints on the Authorea Preprint Repository

A preprint on Authorea can be a complete scientific manuscript submitted to a journal, an essay, a whitepaper, or a blog post. Preprints on Authorea can contain datasets, code, figures, interactive visualizations and computational notebooks.
Read more about preprints.

SARS-CoV-2 prevalence in 1170 asymptomatic Norwegian youths
Einar Kristian| Borud
Espen  Nakstad

Einar Kristian| Borud

and 13 more

August 04, 2020
Background Accurate estimates of SARS-CoV-2 infection in different population groups are important for the health authorities. In Norway, public infection control measures have successfully curbed the pandemic. Military training and service are incompatible with these measures, and therefore stricter infection control measures were necessary in the Norwegian Armed Forces. We present the measures, and discuss the results and their value. We report on the seroprevalence of SARS-CoV-2 and the changes in antibody levels over six weeks. Methods In April 2020, 1170 healthy conscripts (median age 20 years) were enrolled. The infection control measures included a pre-enrollment telephone interview and self-imposed quarantine. Questionnaire data and serial SARS-CoV-2 PCR and serology testing were used to estimate the incidence of confirmed SARS-CoV-2, describe symptoms and monitor titer levels over a six week period. Results The seroprevalence of SARS-CoV-2 was 0. 6 %. Only 0. 2 % had a positive PCR for SARS-CoV-2 at the enrollment day. Serological titer levels increased up to nearly five-fold over the observation period. Eighteen conscripts reported mild respiratory symptoms during the 14 days prior to enrollment (all were PCR negative, one had positive serology), whereas 17 conscripts reported respiratory symptoms and nine had fever at the day of enrollment (all were PCR and serology negative). Conclusions The prevalence of SARS-CoV-2 in young adults in Norway is less than 1%. Testing of asymptomatic conscripts seems of no value in times of low COVID-19 prevalence. SARS-CoV-2 antibody titer levels increased substantially over time in youths with mild symptoms.
Characteristics and forecasting of respiratory viruses epidemic among children in wes...
Wensheng Li
Jinlan He

Wensheng Li

and 5 more

August 04, 2020
Objectives: To assess the characteristics and forecasting of respiratory viruses epidemic among young children with acute respiratory tract infection (ARTI) in west China. Methods: This study retrospected the epidemic characteristics of respiratory viruses among 11813 pediatric patients with ARTI between March 2018 and March 2020. Results: 11813 samples were collected, with a mean age of 2.25 years. The ratio of the boy: the girl was 1.36. The two predominant viruses were influenza (Flu) A and respiratory syncytial virus (RSV), with Flu A accounting for 47.3% (n=1099), 47.5% (n=1333) and RSV accounting for 32.7% (n=760), 24.7% (n=692) of the positive samples in the two respective years. The positive rate of Flu B was 10.9% and 13.1%, and the other four viruses were <7%. The most common virus was RSV in the <5 years group and Flu A in the 5-10 years group. Flu A and RSV demonstrated pronounced seasonality, and their infection rates increased from October. During the pandemic of SARS-CoV-2, isolation measures led to a decline in the number of ARTI. Conclusions: The study provided surveillance of respiratory viruses in west China. It will provide guidance for medical staff to implement the necessary prevention and management strategies before the outbreak of the virus in the future.
From rigid to flexible bronchoscopy: A tertiary center experience in extraction of in...
Inbal Golan-Tripto
Dina Weinstein

Inbal Golan-Tripto

and 6 more

August 04, 2020
Background: Rigid bronchoscopy is the procedure of choice for removal of inhaled foreign bodies, with certain complication rate. Aim: to assess whether flexible bronchoscopy is an efficient and safe procedure in extraction of foreign bodies in children, compared to rigid bronchoscopy. Then, to further assess if it is associated with a shorter procedure time, and shorter length of stay in the hospital (LOS). Methods: a retrospective study including patients aged 0-18 years, that were hospitalized in Soroka University Medical Center throughout 2009-2019, and underwent flexible or rigid bronchoscopy for the removal of inhaled foreign body. The data were analyzed according to two time periods; 2009-2016 and 2017-2019. Results: from 2009-2019, 182 patients (median age of 24 months, 58% males) underwent an interventional bronchoscopy; 40 (22%) by flexible and 142 (78%) by rigid bronchoscopy. 88.73% of rigid and 95% of flexible bronchoscopies were successful in the removal of foreign bodies (p value=0.24). The rate of major complications was higher among rigid bronchoscopy (9.2 % vs. 0%, p =0.047). From 2017 onwards, after implementation of the flexible bronchoscopy for removal of foreign bodies, 64 procedures were performed; 33 (51.6%) flexible and 31 (48.4%) rigid. Procedure length was found to be shorter via flexible bronchoscopy (42 vs 58 minutes, p = 0.016). No significant difference was found in LOS. Conclusion: Flexible bronchoscopy is an efficient and safe method for removal of inhaled foreign bodies in children, with shorter procedure time. It may be the primary procedure for removal of inhaled foreign bodies.
Infant presenting with pulmonary haemorrhage as a sequelae of accidental asphyxiation
Anupama Menon
Ema Kavaliunaite

Anupama Menon

and 1 more

August 04, 2020
Pulmonary haemorrhage in children is rare. Respiratory infections, foreign body aspiration, cystic fibrosis and congenital heart diseases remain the leading causes. We present a 7- week-old male infant, previously fit and well who developed pulmonary haemorrhage while breastfeeding in a sling strapped to mother. We hypothesise that accidental asphyxiation during breast feeding, generated forced inspiratory effort against an obstructed upper airway and led to negative pressure pulmonary oedema (NPPE) and pulmonary haemorrhage. Accidental asphyxiation should be considered in the differential diagnosis of children presenting with pulmonary haemorrhage.
Sapropterin (BH4) aggravates autoimmune encephalomyelitis in mice
Katja Schmitz
Sandra Trautmann

Katja Schmitz

and 12 more

August 04, 2020
Background and Purpose: Depletion of the enzyme cofactor, tetrahydrobiopterin (BH4) in T-cells was shown to prevent their proliferation upon receptor stimulation in models of allergic inflammation in mice suggesting that BH4 drives autoimmunity. Hence, the clinically available BH4 medication (sapropterin) might increase the risk of autoimmune diseases. Experimental Approach: The present study assessed the implications for multiple sclerosis (MS) as a model autoimmune disease in MS patients and in immunization-evoked autoimmune encephalomyelitis (EAE), a model of multiple sclerosis in mice. Key Results: Plasma levels of biopterin were persistently low in MS patients, and the bypass product, neopterin tended to be increased suggesting a relative deficiency of BH4. Ex vivo stimulation of human whole blood indeed led to a drop of biopterin pointing to high consumption. Hence, BH4 replenishment might either further drive the immune response or beneficially restore the BH4 balance. To answer this question, mice were treated with sapropterin in the EAE model. Sapropterin-treated mice had higher EAE disease scores associated with higher numbers of T-cells infiltrating the spinal cord, but normal T-cell subpopulations in spleen and blood, suggesting that BH4 facilitated the invasion of the central nervous system (CNS). Sapropterin-treated EAE mice had increased plasma levels of long-chain ceramides and low levels of the poly-unsaturated fatty acid, linolenic acid (FA18:3). These lipid changes are known to contribute to disruptions of the blood brain barrier in EAE mice. Conclusion and Implications: Sapropterin might aggravate autoimmune disease of the CNS through permissive effects at the brain barrier.
The effects of nebulized antibiotics in children with tracheostomy
Emine Atag
Fusun Unal

Emine Atag

and 7 more

August 04, 2020
Introduction Children with tracheostomy have an increased risk of bacterial colonization and infections of the lower respiratory tracts. This study aimed to investigate the effects of nebulized antibiotics on the bacterial load, the need for oral antibiotic courses, the number of hospitalizations, and the length of stay in the intensive care unit in children with tracheostomy. Methods Children with tracheostomy and persistent bacterial colonization who were started on nebulized antibiotic therapy after a lower respiratory tract infection were included to the study. Nebulized gentamicin or colistin were used according to the results of tracheal aspirate cultures. Demographic and clinic characteristics were recorded from one year before until 12 months after initiating nebulized antibiotic treatment. Results Nebulized antibiotic treatment was initiated in 22 patients. Inhaled gentamicin was administered to 14 patients (63.6%) and colistin to 8 patients (36.4%). The median duration of treatment was 3 months (2-5 months). Following nebulized antibiotic treatment, median number of hospitalizations decreased from 2 (1-3.5) to 1 (0-1.5) (p=0.04). The median length of stay in the intensive care unit reduced significantly from 89.5 days (43-82.5) to 25 days (7.75-62.75) after starting nebulized antibiotics (p = 0.028). Following nebulized antibiotic treatment colony count also decreased (105 CFU/ml (105-106) vs. 6x104 CFU/ml (104-105); p=0.003). Conclusions Nebulize antibiotics are a reasonable treatment option for lower respiratory tract infections for tracheotomized children with persistent colonization. Further studies are needed to determine the main indications and the optimal duration and doses of the long-term nebulized antibiotic treatment in these patients.
Using machine learning models to predict the distribution of a cryptic marine species...
Philippine Chambault
Sabrina Fossette

Philippine Chambault

and 4 more

August 04, 2020
Implementation of effective conservation planning relies on a robust understanding of the spatio-temporal distribution of the target species. In the marine realm, this is even more challenging for cryptic species with extreme diving behaviour like the sperm whales. Our study aims at investigating the movements and predicting suitable habitat maps for this species in the Mascarene Archipelago in the South-West Indian Ocean. Using 21 satellite tracks of sperm whale and 8 environmental predictors, 14 supervised machine learning algorithms were tested and compared to predict the whales' distribution during the wet and dry season, separately. Fourteen of the whales remained in close proximity to Mauritius while a migratory pattern was evidenced with a synchronized departure for 8 females that headed towards Rodrigues Island. The best performing algorithm was the random forest, showing a strong affinity for Sea Surface Height during the wet season and for bottom temperature during the dry season. A more dispersed distribution was predicted during the wet season whereas a more restricted distribution to Mauritius and Reunion waters was found during the dry season. The results of our study fill a knowledge gap regarding seasonal movements and habitat affinities of this vulnerable species, for which IUCN regional assessments are still lacking in the Indian Ocean. Our findings also confirm the great potential of machine learning algorithms in conservation planning and provide concrete tools to support dynamic ocean management.
Efficacy and Safety of EBUS-TBNA and EUS-B-FNA in Children: A Systematic Review and M...
Karan Madan
Hariharan Iyer

Karan Madan

and 9 more

August 04, 2020
Background: Endobronchial Ultrasound-guided Transbronchial Needle Aspiration (EBUS-TBNA) and Transesophageal Bronchoscopic Ultrasound-guided fine-needle aspiration (EUS-B-FNA) are established modalities for evaluation of mediastinal/hilar lymphadenopathy in adults. Limited literature is available on the utility of these modalities in the pediatric population. Herein, we perform a systematic review and meta-analysis on the yield and safety of EBUS-TBNA and EUS-B-FNA in children. Methods: We performed a systematic search of the PubMed and EMBASE databases to extract the studies reporting the utilization of EBUS-TBNA/EUS-B-FNA in children (<18 years of age). Pooled diagnostic yield and sampling adequacy (proportions with 95% confidence intervals) were calculated using the random-effects model. Details of any procedure-related complications were noted. Results: The search yielded 12 relevant studies (five case series and seven case reports on EBUS-TBNA/EUS-B-FNA, 173 patients). Data from five case series (164 patients) were summarized for the calculation of sampling adequacy and diagnostic yield. Safety outcomes were extracted from all publications. The pooled sampling adequacy and combined diagnostic yield of EBUS TBNA/EUS-B-FNA were 98% (95% CI, 92-100%) and 61% (95% CI, 43-77%) respectively. A procedure-related major complication was reported in 1 patient (1/173, Major complication rate 0.6%), and minor complications occurred in 6 patients (6/173, Minor complication rate 3.5%). Conclusions: EBUS-TBNA and EUS-B-FNA are safe modalities for evaluation of mediastinal lymphadenopathy in the pediatric population. EBUS-TBNA/EUS-B-FNA may be considered as the first-line diagnostic modalities for this indication as they have a good diagnostic yield and can avoid the need for invasive diagnostic procedures.
The effect of emerging therapies on cardiopulmonary disease in Duchenne muscular dyst...
Doug McKim
Timothy Cripe

Doug McKim

and 2 more

August 04, 2020
Gene therapy is an attractive approach being intensively studied to prevent muscle deterioration in patients with Duchenne muscular dystrophy. While clinical trials are only in early stages, initial reports are promising for its effects on ambulation. Cardiopulmonary failure, however, is the most common cause of mortality in DMD patients, and little is known regarding the prospects for gene therapy on alleviating DMD-associated cardiomyopathy and respiratory failure. Here we review current knowledge regarding effects of gene therapy on DMD cardiomyopathy and discuss respiratory endpoints that should be considered as outcome measures in future clinical trials.
A comparative study between resting-state fMRI and plasma markers in subjects with mi...
long wang

long wang

August 04, 2020
From April 2018 to December 2019, we recruited 31 volunteers with mild cognitive impairment and 33 volunteers in the healthy control group from the residents of Wuxi City’s community. Relevant researches on resting state functional magnetic resonance and human plasma markers were done respectively; Studies have shown that there are differences in brain function between the MCI group and the healthy control group, which is similar to previous studies[1]; It is worth noting that most plasma markers and cerebrospinal fluid, apolipoprotein gene E have no significant difference, Most previous studies of the same kind have shown anomalies[2], and we speculate that this difference may be related to ethnic or regional differences[3, 4]. Next, we will expand the sample size to further verify this guess
The Probability of Events for Parabolic Equations
Guangying Lv
Jinlong Wei

Guangying Lv

and 1 more

August 04, 2020
In this short paper, we focus on the blowup phenomenon of stochastic parabolic equations. We first discuss the probability of the event that the solutions keep positive. Then, the blowup phenomenon in the whole space is considered. The probability of the event that the solutions blow up in finite time is given. Lastly, we obtain the probability of the event that blowup time of stochastic parabolic equations larger than or less than the deterministic case.
PSEUDO ALMOST PERIODIC SOLUTIONS FOR EVOLUTION EQUATIONS AND APPLICATIONS
Mounir  Ben Salah

Mounir Ben Salah

August 04, 2020
In this paper we investigate the existence of the pseudo almost periodic solutions for evolution equations by using Schaffer theorem. Moreover, we study the exponential stability of these solutions. As application, we give examples in biology models to illustrate the main results of this work.
Genomic signatures of clonality in the deep water kelp Laminaria rodriguezii
Lauric REYNES
Thierry Thibaut

Lauric REYNES

and 8 more

August 04, 2020
Understanding the evolution of sexual vs asexual reproduction and their consequences in population genetics is a central tenet of evolutionary biology. Nevertheless, until now, it has proved unachievable to assess partially clonal reproduction when the rate of clonality is less than 95%, especially without the use of genome-wide data or temporal samples. Here, we investigate the genomic signatures of partial clonality in the deep water kelp Laminaria rodriguezii, known to reproduce by both sexual and asexual means. The results of these investigations have been interpreted by comparison with the sexually reproducing congeneric species Laminaria digitata. Genome-wide variation was assessed by dd-RAD sequencing using 4077 SNPs in L. rodriguezii and 7364 SNPs in L. digitata. As predicted for partially clonal populations, the distribution of FIS within populations of L. rodriguezii was centered in negative values, with heterozygote excess at most loci along the genomes. This finding is the opposite of what we reported within sexual populations of L. digitata, characterized by a generalized deficit in heterozygotes. Furthermore, two distinct distribution patterns of FIS were reported among populations of L. rodriguezii, consistent with the results predicted by the theoretical model for different levels of clonality. These findings highlight that the investment in clonal growth could differ among populations of L. rodriguezii, confirming that the full distribution of FIS is a promising feature to take into account for the study of asexuality in natural populations. We discuss the implications of these results for the conservation of the rare deep water kelp L. rodriguezii.
Time periodic solutions for the full quantum Euler equation
Min LI
Xianzhong Yao

Min LI

and 1 more

August 04, 2020
In this paper, we establish the existence and uniqueness of a time periodic solution to the full compressible quantum Euler equations. First, we prove the existence of time periodic solutions under some smallness assumptions imposed on the external force in a periodic domain by a regularized approximation scheme and the Leray-Schauder degree theory. Then the result is generalized to $\mathbb{R}^{3}$ by adapting a limiting method and a diagonal argument. The uniqueness of the time periodic solutions is also given. Compared to classical Euler equations, the third-order quantum spatial derivatives are considered which need some elaborated treatments thereof in obtaining the highest-order energy estimates.
Small left atrial volume before ablation is a predictor of tachycardia-induced cardio...
Masahiro Nauchi
Tsuyoshi Sakai

Masahiro Nauchi

and 3 more

August 04, 2020
Abstract Introduction: Tachycardia-induced cardiomyopathy (TCM) is a reversible cause of heart failure (HF) with impaired left ventricle (LV) function. However, the diagnosis is difficult before treatment or control of the arrhythmia for the first time. Methods: In this retrospective observational study, we observed 32 patients with paroxysmal or persistent atrial fibrillation (AF) who had impaired LV function without structural heart disease and who underwent catheter ablation. We defined impaired LV function as LV ejection fraction (LVEF) <50%. After ablation, the LVEF became <60% (Group 1; n = 11) or 60% (Group 2; n = 21). We compared the differences in baseline characteristics between the two groups. The patients in Group1 had no ischemic disease. A receiver operating curve (ROC) with area under the curve (AUC) was used to evaluate the prediction efficiency. Results: There were significant differences in left atrial (LA) volume (LAV) and LAV adjusted by body surface area (LAVI) measured by computed tomography (p < 0.05 for both). The AUCs were 0.810 and 0.823, respectively. The points at which sensitivity and specificity were maximum were 147 ml and 79. Small LAV and LAVI were predictors of LVEF improvement. Conclusion: Small LAV measured by computed tomography (CT) before ablation may be useful for diagnosis of TCM with AF.
Efficacy and safety of glucokinase activators for type 2 diabetes mellitus therapy: A...
Yiqian Qu
Keer Wang

Yiqian Qu

and 4 more

August 04, 2020
Abstract Objectives: To assess the efficacy and safety of oral glucokinase activator (GKA) in the treatment of type 2 diabetes mellitus(T2DM). Methods: We searched PubMed, ClinicalTrails, Cochrane Library, Web of Science, and CNKI and collected randomized controlled trials (RCTs) of glucokinase activator in the treatment of T2DM. Revman5.3 software was used to do the meta-analysis. And the risk of bias in the included RCTs was evaluated according to the Cochrane tool. Results: Seven double-blind RTCs were included in the final analysis, with a total of 762 patients. Regarding the efficacy, GKAs significantly reduced fasting blood glucose (mean difference -0.71, 95% CI: -1.11 to -0.31, based on 459 patients from 5 literatures), and glycated hemoglobin also significantly reduced (mean difference: -0.65%, 95% CI: -0.82 to -0.48, based on 570 patients from 4 literatures). Regarding safety, GKAs did not affect the total rate of adverse events(AEs) (relative risk(RR) 1.11, 95% CI: 0.95 to 1.30, P = 0.19), but increased the risk of hypoglycemia (RR 1.81, 95% CI: 1.35 to 2.42, P < 0.0001). And the risk of diarrhea (RR 1.59, 95% CI: 0.7 to 3.65, P = 0.26), headache (RR 0.96, 95% CI: 0.41-2.21, P = 0.60) and nausea (RR 2.23, 95% CI: 0.55-9.12, P = 0.24) were not significantly increased in GKAs group. Conclusions: Oral GKAs combined with metformin has an obvious hypoglycemic effect on T2DM and good tolerance. Further clinical studies are still necessary to explore its long-term efficacy and safety. Keywords: Glucokinase; Glucokinase activator; Type 2 diabetes; Meta-analysis
Best proximity point results for mixed multivalued mappings with application to homot...
Mustafa Aslantaş

Mustafa Aslantaş

August 03, 2020
In this paper, first, we introduce a concept of mixed multivalued contraction mapping. Then, we present some best proximity point results for such mappings on 0-complete partial metric spaces. Hence, we extend and generalize some famous and nice results existing in the literature such as Abkar and Gabeleh, Gabeleh and Aydi et al. Also, we provide some nontrivial illustrative examples to support our results and to compare with the results mentioned before. Finally, the first time, we give some applications to homotopy theory via new best proximity point results. Hence, we obtain some best proximity point results for homotopic mappings
Effectively and accurately mapping global biodiversity patterns for different regions...
Alice Hughes
Michael Orr

Alice Hughes

and 3 more

August 04, 2020
Understanding patterns of biodiversity is crucial for developing appropriate conservation and management plans. The IUCN RedList is looked upon as a source of globally-consistent assessment of species extinction risk, including range maps as part of the extinction risk assessment. Species ranges are a central criterion in determining extinction vulnerability, and consequently apportioning conservation and research efforts. Thus, the accuracy of these maps is crucial to the effective conservation of global biodiversity. Given difficulties in acquiring sufficient, reliable point data and the need for species or diversity maps within many studies, countless papers rely on these centralized expert range maps. However, such efforts are vulnerable to errors if not carefully checked, and the drive to assess as many species as possible rather than to ensure meaningful quality assessment may drive high error rates, with huge implications for species conservation. Recent efforts to account for the over-generalization of species ranges by trimming species ranges with landcover and elevation also makes a number of assumptions on the consistency and accuracy of global data, the lack of politically-driven biases. Here, we analyse the biases present in 50768 animal IUCN and BirdLife maps and provide suggestions on how such analyses could be improved, and flag spatial and taxonomic inconsistencies to enable analysis to acknowledge the limitations of data in further analysis based on these maps. We also discuss effective ways to overcome these biases, the limits of such applications and explore alternative means of mapping diversity patterns.
A novel approach to solve the delay differential equations by using Clique polynomial
Ravikiran Mundewadi
Raju Jummannaver

Ravikiran Mundewadi

and 1 more

August 04, 2020
A document by Ravikiran Mundewadi. Click on the document to view its contents.
Sampling Error of Continuous Periodic Data and its Application for Geodesy
foldvary.lorant

Lorant Foldvary

June 25, 2021
Data acquisition for geoinformatics cannot be done continuously, but by discrete sampling of the object or phenomenon. The sampling involves errors on the knowledge of the continuous signal due to the loss of information in the sampling procedure. In the present study, an analytical formulation of the sampling error is provided, which embodies the amplitude, phase, bias and periodicity of the sampling error. The analysis is then subsequently applied for case studies: for the GRACE and GRACE-FO monthly solutions, and for different realizations of the Hungarian Gravimetric Network.
Monotonicity of Standing waves for the nonlinear fractional Schrödinger equations
Yajie Zhang
Feiyao Ma

Yajie Zhang

and 2 more

August 03, 2020
In this paper, we investigate the standing waves of fractional Laplacian Schrödinger equations. The monotonicity of standing waves of fractional Schrödinger equations was obtainded by using sliding method. In addition, non-existence result of standing waves is presented.
Flow intermittence alters carbon processing in rivers through chemical diversificatio...
Rubén del Campo
Roland Corti

Rubén del Campo

and 2 more

October 14, 2020
The dry phase of intermittent rivers promotes the emergence of diverse terrestrial and aquatic habitats where large amounts of leaf litter can accumulate. This environmental heterogeneity can cause diverse chemical alterations in leaf litter by the co-occurrence of multiple physical and biological degradation processes across these different habitats. After flow resumption, these chemically diversified leaves are mixed and continue decomposition downstream in fully aquatic conditions. We hypothesized that environmental heterogeneity during the dry phase can translate into a chemical diversification of leaf litter, that may affect leaf litter decomposition in re-established lotic conditions. Our laboratory treatments mimicking dry-phase habitats caused a strong chemical diversification of leaf litter, which – upon combination in mixed litter bags – accelerated its decomposition in a perennial river reach. Intermittent river reaches may act as hotspots of organic matter diversification, with potential implications on C processing at river-network scale.
Body mass and skull dimensions predict seed dispersal capacity in bats, primates and...
Elise Sivault
Kim McConkey

Elise Sivault

and 7 more

August 03, 2020
Endozoochory is an essential plant-animal interaction in tropical forests, involving the swallowing and defecation of seeds. To better understand whether anatomical traits (i.e. body mass and skull dimensions) are good predictors of seed dispersal in mammals we studied the relationships between morphology, fruit and seed size and seed dispersal distance across three orders: Chiroptera, Primates, and Carnivora. Our results revealed that body mass is an important driver of the size of ingested seeds for all orders and of the seed dispersal distance produced by Primates. In addition, the distance between the molars, jaw length, and jaw gape are good predictors of the size of ingested seeds. These results show how body mass and cranial anatomy constrain ingested seed size and dispersal distance across mammals and reinforce the importance of maintaining functional diversity in seed dispersers to maintain tropical forest structure and regeneration.
Model-based genotype and ancestry estimation for potential hybrids with mixed-ploidy
Vivaswat Shastry
Paula Adams

Vivaswat Shastry

and 6 more

August 03, 2020
Non-random mating among individuals can lead to spatial clustering of genetically similar individuals and population stratification. This deviation from panmixia is commonly observed in natural populations. Consequently, individuals can have parentage in single populations or involving hybridization between differentiated populations. Accounting for this mixture and structure is important when mapping the genetics of traits and learning about the formative evolutionary processes that shape genetic variation among individuals and populations. Stratified genetic relatedness among individuals is commonly quantified using estimates of ancestry that are derived from a statistical model. Development of these models for polyploid and mixed-ploidy individuals and populations has lagged behind those for diploids. Here, we extend and test a hierarchical Bayesian model, called entropy, which can utilize low-depth sequence data to estimate genotype and ancestry parameters in autopolyploid and mixed-ploidy individuals (including sex chromosomes and autosomes within individuals). Our analysis of simulated data illustrated the trade-off between sequencing depth and genome coverage and found lower error associated with low depth sequencing across a larger fraction of the genome than with high depth sequencing across a smaller fraction of the genome. The model has high accuracy and sensitivity as verified with simulated data and through analysis of admixture among populations of diploid and tetraploid Arabidopsis arenosa.
← Previous 1 2 … 2454 2455 2456 2457 2458 2459 2460 2461 2462 … 2754 2755 Next →

| Powered by Authorea.com

  • Home