AUTHOREA
Log in Sign Up Browse Preprints
LOG IN SIGN UP

Preprints

Explore 66,105 preprints on the Authorea Preprint Repository

A preprint on Authorea can be a complete scientific manuscript submitted to a journal, an essay, a whitepaper, or a blog post. Preprints on Authorea can contain datasets, code, figures, interactive visualizations and computational notebooks.
Read more about preprints.

Polinomial model revisited -- a simple calculation of the kinematical parameters of a...
Nataša Janjić
Darko Kapor

Nataša Janjić

and 4 more

September 10, 2020
We summarize and extend here a simple procedure allowing to obtain all important parameters of the 100 m run based on the measured values for the distance S from the start line and expired time t. An example for testing the proposed model are the results for segment values for S and t for elite sprinters, male: C. Lewis, M. Green and U. Bolt, and female: F. Griffith-Jоyner., F. Ashford and H. Drecksler. The distance is approximated by a third order polinomial function S = f(t), which is easily fitted from the split (segment) times. This function is a mathematical model enabling, by using a standard mathematical treatment, to obtain the equations for determining the point of the maximal sprinter velocity vdmax, corresponding to vanishing acceleration, its distance from the start line Sdmax and corresponding time moment tdmax. The function provides direct reading of the initial velocity vo as well as finding the expressions for the sprinter instantaneous velocity vt and acceleration at. It also provides the initial acceleration, enabling to determine the force acting at the begining of the run. Results obtained justified the proposed approach for a universal and practical preparation tool and also showed that there do not exist so large differences in the values of kinematical parameters between analyzed male and female sprinters. The didactical purpose of the paper is to demonstrate how the combination of (unrealistic) exactly solvable model with the knowledge of the realistic behaviour can lead to a good numerical fit.
SOR-based alternately linearized implicit iteration method for nonsymmetric algebraic...
Tongxin Yan
Changfeng Ma

Tongxin Yan

and 1 more

September 01, 2020
In this paper, we propose a class of SOR-based alternately linearized implicit iteration method (SORALI) for computing the minimal nonnegative solution of nonsymmetric algebraic Riccati equations (NARE). Under certain conditions, we prove the convergence of the iterative method. Finally, numerical examples are given to show the iterative method is efficient.
Clinical Medical Education: Cardiothoracic Surgery in the Era of COVID-19
Andy Dong
Francis Simpson

Andy Dong

and 3 more

September 10, 2020
Background and Aim: Clinical education has been disrupted by the COVID-19 pandemic. We present a standardized remote alternative online cardiothoracic surgery primer to accommodate a shortened clinical calendar. Methods: A week-long cardiothoracic surgery course consisting of virtual case-based lectures and small groups as well as surgical operation walkthroughs was conducted iteratively through April and May 2020 at Emory University School of Medicine, Atlanta, GA for new clinical third-year medical students. Results: Remote learning platforms helped maintain medical student clinical education. Cardiothoracic procedure video walkthroughs were highly demanded for remote learning. Virtual small group discussions were felt to be invaluable in facilitating active problem solving and clinical decision making of cardiothoracic surgery. Conclusion: Our online cardiothoracic surgery curriculum can be a framework for alternative medical student clinical education. Student feedback is necessary as we adapt to teaching during the COVID-19 pandemic and future global disruptions.
Quantification of soy-based feed ingredient entry from ASFV-positive countries to the...
Gilbert Patterson
Megan Niederwerder

Gilbert Patterson

and 3 more

September 10, 2020
African swine fever virus (ASFV) can survive in soy-based products for 30 days with T ½ ranging from 9.6-12.9 days in soybean meals and soy oil cake. As the US imports soy-based products from several ASFV-positive countries, knowledge of the type and quantity of these specific imports, and their ports of entry (POE), is necessary information to manage risk. Using the data from the International Trade Commission Harmonized Tariff Schedule website in conjunction with pivot tables, we analyzed imports across air, land, and sea POE of soy-based products from 43 ASFV-positive countries to the US during 2018 and 2019. In 2018, 104,366 metric tons (MT) of soy-based products, specifically conventional and organic soybean meal, soybeans, soy oil cake and soy oil were imported from these countries into the US via seaports only. The two largest suppliers were China (52.7 %, 55,034 MT) and the Ukraine (42.9%, 44,775 MT). In 2019, 73,331 MT entered the US and 54.7% (40,143 MT) came from the Ukraine and 8.4% (6,182 MT) from China. Regarding POE, 80.9% to 83.2% of soy-based imports from China entered the US at the seaports of San Francisco, CA and Seattle, WA, while 89.4% to 100% entered from the Ukraine via the seaports of New Orleans, LA and Charlotte, NC. Analysis of five-year trends (2015 to 2019) of the volume of soy imports from China indicated reduction over time (with a noticeably sharp decrease between 2018 and 2019), and seaport utilization was consistent. In contrast, volume remained high for Ukrainian soy imports, and seaport utilization was inconsistent. Overall, this exercise introduced a new approach to collect objective data on an important risk factor, providing researchers, government officials, and industry stakeholders a means to objectively identify and quantify potential channels of foreign animal disease entry into the US.
Recombinant myxoma virus infection associated with high mortality in rabbit farming...
Fábio A. Abade dos Santos
Carina Carvalho

Fábio A. Abade dos Santos

and 6 more

September 09, 2020
Myxomatosis is an emergent disease in Iberian hare, having been considered a rabbit disease for decades. Genome sequencing of the strains obtained from affected Iberian hares showed to be distinct from the classical strains that circulated in rabbits since the virus introduction in Europe, in 1952. The main genomic difference concerns the presence of an additional 2.8Kb region disrupting the M009L gene and adding a set of genes with homology to the MYXV genes M060R, M061, M064 and M065R originated in poxviruses. After the emergence of this recombinant virus (MYXV-Tol or ha-MYXV), in the summer of 2019, the recombinant MYXV was not detected in rabbit surveys suggesting apparent species segregation with the MYXV classic strains persistently circulating in rabbits. Recently, a group of six unvaccinated European rabbits (Oryctolagus cuniculus cuniculus) from a backyard rabbitry in the South Portugal, developed signs of myxomatosis (anorexia, dyspnoea, oedema of eyelids, head, ears, external genitals and anus, and skin myxomas in the base of the ears), five of them dying within 24-48 hours of symptoms onset. Molecular analysis revealed that only the recombinant myxoma virus was present. This is the first documented report of a recombinant myxoma virus (ha-MYXV)  in farm rabbits associated with high mortality, which aggravates the concern for the future of the Iberian hare and wild rabbits and the safety of the rabbit industry against which the existing vaccines may not be fully protective.
k-Order Gaussian Fibonacci Matrices and Some Applications
Mustafa AŞCI
Süleyman Aydınyüz

Mustafa AŞCI

and 1 more

September 01, 2020
In this paper we introduce and study k-order Gaussian Fibonacci Coding Theory. We give illustrative examples about coding theory. This coding theory is a method bound to the Q_k, R_k and E_n^(k) matrices. This coding/decoding method is different from classical algebraic coding. k-order Gaussian Fibonacci Coding method depends on matrix multiplication and can be performed quickly and easily by today’s computers. This method will not only ensures information security in data transfer but also has high correct ability. Consequently, this method aims to increase the reliability of information transfer by moving the coding theory to the complex space.
Baicalin protects against APEC-induced colibacillosis by regulating gut microbiota an...
Lu-Yuan Peng
Hai-Tao Shi

Lu-Yuan Peng

and 8 more

September 10, 2020
BACKGROUND AND PURPOSE Chicken colibacillosis, caused by avian Escherichia coli (APEC), results in huge economic losses to the poultry industry. Baicalin exerts protective effects during the development of colibacillosis. In this study, we mainly explored the mechanism of this protective effects with regard to gut microbiota. EXPERIMENTAL APPROACH The chicken colibacillosis model was established by intratracheal instillation of APEC. The gut microbiota-depleted chicken model was established with broad-spectrum antibiotics. Viscera index measurement and Haematoxylin and eosin stain were applied to assess histological changes of tissues. ELISA were used to measure the cytokines and Quantitative-PCR were used to evaluate the gene expression. The gut microbiota and its metabolite were detected by 16srDNA and ultrahigh-performance liquid chromatography (LC-MS). KEY RESULTS Depletion of gut microbiota exacerbated the tissue damage and weakened the protective effects of baicalin during APEC-induced chicken colibacillosis while pretreatment of baicalin reduced these changes and inflammatory response induced by APEC. Moreover, APEC infection led to dysbiosis of gut microbiota and its metabolites. However, the pretreatment of baicalin remodeled the gut microbiota featured with increased abundance of Intestinimonas and its associated with beneficial metabolites. CONCLUSIONS Gut microbiota played a protective role in the prevention of chicken colibacillosis and the pharmacological action of baicalin. The altered specific gut bacterial and/or metabolites may be served as indicators to predict the occurrence and prognosis of chicken colibacillosis. Our findings may provide a paradigm for the mechanistic studies of compounds and aid the exploration of the mechanisms and pathways underlying the function of herbal medicines.
Improving the homologous recombination efficiency of Yarrowia lipolytica by grafting...
Qingchun Ji
Jie Mai

Qingchun Ji

and 5 more

September 10, 2020
The oleaginous non-conventional yeast Yarrowia lipolytica has enormous potential as a microbial platform for the synthesis of various bioproducts. However, while the model yeast Saccharomyces cerevisiae has very high homologous recombination (HR) efficiency, non-homologous recombination is dominant in Y. lipolytica, and foreign genes are randomly inserted into the genome. Consequently, the low HR efficiency greatly restricts the genetic engineering of this yeast. In this study, RAD52, the key component of the HR machinery in S. cerevisiae, was grafted into Y. lipolytica to improve HR efficiency. The gene ade2, whose deletion can result in a brown colony phenotype, was used as the reporter gene for evaluating the HR efficiency. The HR efficiency of Y. lipolytica strains before and after integrating the ScRad52 gene was compared using insets with homology arms of different length. The results showed that the strategy could achieve gene targeting efficiencies of up to 95% with a homology arm length of 1000 bp, which was 6.5 times of the wildtype strain and 1.6 times of the traditionally used ku70 disruption strategy. This study will facilitate the further genetic engineering of Y. lipolytica to make it a more efficient cell factory for the production of value-added compounds.
The BLIiNG study - Breastfeeding length and intensity in gestational diabetes and met...
Sarah J Melov
Lisa White

Sarah J Melov

and 8 more

September 10, 2020
Objective To investigate if increased length and intensity of breastfeeding mediates gestational diabetes mellitus (GDM) risk in a subsequent pregnancy. Design Multisite cohort study. Setting Western Sydney, Australia, March 2017–April 2019. Population Women with a second subsequent pregnancy after a GDM-affected first pregnancy. Methods Information on breastfeeding experience, intensity and GDM management in the first pregnancy was collected by questionnaire. The results of the oral glucose tolerance test (OGTT) in the second pregnancy were also recorded. Multivariable models for OGTT and for diagnosis of GDM were fitted and then adjusted for medical treatment of GDM in the first pregnancy, BMI, age at current pregnancy and ethnicity. Main outcome measures Second pregnancy oral glucose tolerance test (OGTT) blood glucose results and diagnosis of GDM. Results We recruited 227 women with 210 eligible for analysis. Of these women, 146 (70%) were diagnosed with recurrent GDM. We found a 19% reduction in the risk of GDM in a subsequent pregnancy if a woman breastfed for more than six months (RR 0.81, 95% CI 0.68–0.96) after adjusting for both age and BMI. In a fully adjusted model, the association was attenuated (RR 0.89, 95% CI 0.78–1.02). With the same adjusted confounders, however, both high intensity breastfeeding (2 h OGTT, P = 0.01) and breastfeeding for greater than six months (1 h OGTT, P = 0.01) were associated with a mean blood glucose decrease of 0.7mmol/L. Conclusion We found the risk of recurrent GDM was reduced by both increased duration and intensity of breastfeeding.
Early and Systematic Administration of Fibrinogen Concentrate in Postpartum Haemorrha...
Ducloy-Bouthors Anne-Sophie
Frederic Mercier

Ducloy-Bouthors Ducloy-Bouthors

and 12 more

September 10, 2020
Objective: To assess the benefits and safety of early human fibrinogen concentrate (FC) in postpartum haemorrhage (PPH) management. Design: Multicentre, double-blind, randomized placebo-controlled trial. Setting:30 French hospitals. Population: patients with persistent PPH after vaginal delivery requiring a switch from oxytocin to prostaglandins. Methods: Within 30 min after introduction of prostaglandins, patients received either 3 g FC or placebo. Main outcome measures: Failure as composite primary efficacy endpoint: at least 4 g/dL of haemoglobin decrease and/or transfusion of at least 2 units of packed red blood cells within 48h following investigational medicinal product administration. Secondary endpoints: PPH evolution, need for haemostatic procedures, and maternal morbidity-mortality within 6±2 weeks after delivery. Results: the intention-to-treat analysis included 437 patients of which 224 received FC and 213 placebo. At inclusion, blood loss (877 ± 346mL) and plasma fibrinogen (FG) (4.1 ± 0.9g/L) were similar in both groups (mean ± SD). Failure rates were 40.0% and 42.4% in the FC and placebo groups, respectively (OR=0.99) after adjustment on centre and baseline FG; (95%CI: [0.66;1.47]; p=0.96). No significant differences in secondary efficacy outcomes were observed. The mean plasma FG was unchanged after 2 hours in the FC group and decreased by 0.56 g/L in the placebo group. No thromboembolic or other relevant adverse effects were reported in the FC group, versus two in the placebo group. Conclusions: Early and systematic administration of 3 g fibrinogen concentrate did not reduce blood loss, transfusion needs, and postpartum anaemia, but prevented plasma fibrinogen decrease without any subsequent thromboembolic events.
Early-onset preeclampsia – the impact of antiphospholipid antibodies on disease sever...
Roni Zemet
Micha Baum

Roni Zemet

and 5 more

September 10, 2020
Objective: To evaluate whether early-onset severe preeclampsia prior to 34 weeks’ gestation is clinically different when associated with antiphospholipid antibodies. Design: A retrospective case-control study. Setting: Single university-affiliated tertiary referral center Population: 55 women with singleton pregnancies who delivered prior to 34 weeks’ gestation due to preeclampsia with severe features. Methods: Out of the 101 women with preeclampsia with severe features, the antiphospholipid antibodies status of 55 was available for analysis. The study group comprised 20 women with positive antiphospholipid antibodies (positive-aPL group), while the control group comprised 35 women without antiphospholipid antibodies (negative-aPL group). Main outcome measures: Obstetric and neonatal outcomes, laboratory results and pregnancy complications. Results: Positive-aPL women were hospitalized earlier (29, IQR 26.3–32, vs. 32, IQR 28-33 weeks gestation, p=0.05), gave birth at a significantly earlier gestational age (30, IQR 28.3-32.8 vs. 33, IQR 30-34, p=0.02) with a lower mean birth weight (1266.7±579.6 vs. 1567.3±539.7 grams, p=0.058) compared with negative-aPL women. Furthermore, platelet nadir was significantly lower for positive-aPL compared with negative-aPL women (97.2±49.7103/µL vs 141.3±61.13/µL, p<0.001) and maximal serum creatinine was higher (1.02±0.32 mg/dL vs. 0.92±0.13 mg/dL, p=0.03). Rates of neonatal complications were low and comparable between groups, although there was a trend for higher perinatal mortality among study group infants. Conclusions: The presence of antiphospholipid antibodies in women with early-onset preeclampsia with severe features is associated with earlier, more severe multi-organ involvement. Expedited screening for antiphospholipid antibodies in cases of early-onset severe preeclampsia may be considered.
Long-term Neurocognitive and Quality of Life Outcomes in Survivors of Pediatric Hemat...
Natalie Wu
Kevin Krull

Natalie Wu

and 6 more

September 10, 2020
Background: Pediatric patients who undergo hematopoietic cell transplant (HCT) are at risk for neurocognitive impairments; however, long-term studies are lacking. Procedure: Eligible survivors (HCT at age <21y and ≥1y post-HCT) completed a 60-question survey of neurocognitive function and quality of life, which included the Childhood Cancer Survivor Study Neurocognitive Questionnaire (CCSS-NCQ) and the Neuro-Quality of Life Cognitive Function Short Form (Neuro-QoL). Baseline demographic and transplant characteristics were retrieved from the institutional research database. Analyses of risk factors included univariate comparisons and multivariable logistic regression. Results: Participants (n=199, 50.3% female, 53.3% acute leukemia, 87.9% allogeneic transplants) were surveyed at median age of 37.8 years (range 18-61) at survey and median 27.6 years (range 1-46) from transplant. On the CCSS-NCQ, 18.9-32.5% of survivors reported impairments (Z-score >1.28) in task efficiency, memory, emotional regulation, or organization, compared with expected 10% in the general population (all p<0.01). Certain co-morbidities were associated with impaired CCSS-NCQ scores. However, survivors reported average Neuro-QoL (T-score 49.6±0.7) compared with population normative value of 50 (p=0.52). In multivariable regression, impaired Neuro-QoL (T-score <40) was independently associated with hearing issues (OR 4.79, 95% CI 1.91-12.0), history of stroke or seizure (OR 5.22, 95% CI 1.73-15.7), and sleep disturbances (OR 6.90, 95% CI 2.53-18.9). Conclusions: Although long-term survivors of pediatric HCT reported higher rates of impairment in specific neurocognitive domains, cognitive quality of life was perceived as similar to the general population. Subsets of survivors with certain co-morbidities had substantially worse neurocognitive outcomes.
Thermomechanical Analysis of Large Deflection of Shear Deformable FG-CNT Reinforced C...
Hadi Babaei
Yaser Kiani

Hadi Babaei

and 2 more

September 01, 2020
A document by Hadi Babaei. Click on the document to view its contents.
Bacterial drift and dispersal drive microbiome diversity within a population of feral...
Mason Stothart
Ruth Greuel

Mason Stothart

and 6 more

September 10, 2020
Studies of microbiome variation in the wild often emphasize host physiology and diet as proximate selective pressures acting on host-associated microbiota. In contrast, microbial dispersal is more rarely considered, and when it is, spatially autocorrelated environmental variables are sometimes overlooked. Using amplicon sequencing, we characterized the bacterial microbiome of adult female (n = 86) Sable Island horses (Nova Scotia, Canada) as part of a detailed, individual-based study of the ecology and evolution of this unmanaged free-living population. Using data on sampling date, horse location, age, parental status, and local exposure to habitat variables, we contrasted the ability of spatiotemporal, physiological, and environmental factors to explain microbiome diversity among Sable Island horses. We extended inferences made from these analyses with both phylogeny-informed and phylogeny-independent null modeling approaches to identify deviations from stochastic expectations. Phylogeny-informed diversity measures were more often correlated with local habitat composition, although null modeling results did not support differential selection acting on the microbiome as the mechanism for these correlative patterns. Conversely, phylogeny-independent diversity measures were best explained by spatial terms, with evidence for spatial- and host social-structured bacterial dispersal limitation. Parental status was important but correlated with measures of β-dispersion rather than β-diversity (mares without foals had lower alpha diversity and more variable microbiomes than mares with foals). Our results suggest that inter-host microbiome variation in this population is driven more strongly by bacterial dispersal limitation and ecological drift than by differential selective pressures, highlighting the need to consider alternative ecological processes in the study of microbiomes.
Management of acute and chronic aortic disease during the COVID-19 pandemic- results...
Martin Czerny
Josua VanDenBerg

Martin Czerny

and 14 more

September 01, 2020
Background. To share the results of a web-based expert panel discussion focusing on the management of acute and chronic aortic disease during the COVID-19 pandemic. Methods. A web-based expert panel discussion on April 18th 2020 where 8 experts were invited to share their current experience with COVID-19 disease touching several aspects of aortic medicine, was performed. After each talk, specific questions were asked to the online audience and results were immediately evaluated and shared with faculty and participants. Results. As of April 18 2020, 73.3% of the 87 participants from 26 different countries answered that overall less than 200 COVID positive patients have been treated in their respective institutions. Sixty-five percent reported that their hospital was well prepared for the pandemic. In 57.7 %, the percentage of infected health care professionals was below 5% whereas 23% reported 5-10% and 19.2% reported between 10 and 20%. Three percent reported to have seen aortic ruptures in primarily elective patients having been postponed because of the anticipated need to provide sufficient ICU capacity because of the pandemic. Nearly 70% reported a decrease of acute aortic syndromes since the start of the pandemic. Conclusions. The current COVID-19 pandemic has- led to a decrease of referrals of acute aortic syndromes in many services. The reluctance of patients seeking medical advice seems to be a major driver. The number of patients who have been postponed due to provisioning ICU resources but having experienced aortic rupture in the waiting period, is still low.
RAPID DEPLOYMENT AND SUTURELESS AORTIC PROSTHESES. Time to validate unusual or ‘off l...
Igor Vendramin
Uberto Bortolotti

Igor Vendramin

and 2 more

September 10, 2020
Currently available evidence supports the safety and efficacy of rapid deployment and sutureless prostheses for aortic valve replacement (AVR) in aortic stenosis as suggested by the International Expert Consensus in 2016. Following the increasing experience and the good results obtained in AVR, the use of sutureless and rapid deployment prostheses in peculiar situations, at times as an ‘off-label’ indication, has been reported demonstrating to represent an effective solution to challenging surgical problems, such as described by Piperata et al. in a recent issue of the Journal of Cardiac Surgery for the treatment of active infective endocarditis complicated by an extensive aortic annulus abscess. The considerable experience acquired so far with rapid deployment and sutureless valves has stimulated many surgeons to use such devices in patients in whom limiting the overall ischemic time is felt to be of paramount importance, but also in different surgical scenarios. Therefore, we believe the time has come to strongly support the unusual or even ‘off label’ employment of these devices by including them in future recommendations.
Landscape Analysis Over 30 Years to Assess the Impact of River Damming On Natural Eco...
Hasti Andon Petrosians
Afshin Danehkar

Hasti Andon Petrosians

and 3 more

May 05, 2021
Although there are considerable profits in dam projects, they contribute to significant environmental changes. Landscape patterns are influenced by human pressure and are altered continuously. This study investigated the changes in the landscape pattern of Jask’s coastal area in Iran due to the Jagin River dam’s construction. A proposed methodology employed satellite images from 1987 to 2018 and classified them by multiple approaches to make LULC maps. Eight information categories were evaluated after classification. The accuracy of the classification was determined using the error matrix and kappa index. FRAGSTATS software was applied to calculate several landscape metrics such as edge density (ED), largest patch index (LPI) and Shannon’s diversity index (SHDI). The study reported that water right especially in the recent years, because of excessive use of reserve water, decreased and downstream of Jagin River was dried. The landscapes were continuously characterized by anthropogenic pattern features (agriculture land, aquaculture land, built-up land and residential land) after the dam’s construction. Rangeland cover and riparian vegetation decreased, and agriculture land increased with in filling pattern. The sand dune area has been spread to the residential area and roots of mangrove forests, because of this reason some parts of mangrove forest dried and roads are covered by sand dune. Their temporal comparison allowed us to localize the change in landscape patterns under the study time. The results can help decision-makers to evaluate the net benefits acquired as a result of the dam projects.
Pulmonary Calling: The Rise of Pulmonary Telemedicine During the COVID-19 Pandemic
Jenny Lin
Julie Fierro

Jenny Lin

and 9 more

September 10, 2020
Objective The Division of Pulmonary and Sleep Medicine at Children’s Hospital of Philadelphia rapidly implemented pulmonary telemedicine visits during the coronavirus disease 2019 (COVID-19) pandemic. The feasibility, utility, and favorability of telemedicine visits for a wide range of pediatric pulmonary conditions were assessed. Methods Providers were sent a survey on May 8, 2020 to assess attitudes, perspectives, and favorability of pulmonary telemedicine visits based on their composite experiences since the conversion to telemedicine visits on March 24, 2020. A similar survey was sent to all patients who completed a pulmonary telemedicine visit from May 17, 2020 through June 12, 2020. Patient and provider survey responses about pulmonary telemedicine utility, benefits, limitations, and overall experience were analyzed. Results Overall, patients and providers expressed a high degree of satisfaction with the telemedicine experience, with 92% of patients and 72% of providers rating their telemedicine experience as excellent or very good. Both patients and providers were most interested in using telemedicine for regular follow-up visits and for sooner appointments. More than 70% of patients and 90% of providers indicated telemedicine was more convenient for patients compared to in-person clinic visits. All providers and 85% of patients who responded indicated interest in continuing telemedicine in the future. Conclusions This study demonstrates that telemedicine is a feasible and favorable method of healthcare delivery of pulmonary medicine for the full spectrum of conditions treated by pediatric pulmonary and sleep medicine specialists. This has important implications for the use of telemedicine during the COVID-19 pandemic and beyond.
A Case with Hypereosinophilic Syndrome Mimicking COVID-19 Disease
Pembe Derin Oygar
Berna Oguz

Pembe Derin Oygar

and 4 more

September 01, 2020
bstract: Hypereosinophilic syndrome (HES) is a rare group of disorders with marked eosinophilia and organ damage usually affecting adults. Any organ system can be affected, cardiopulmonary and neurologic involvement being major cause of mortality. Although rarer pediatric cases have been reported with different clinical and molecular findings compared to adults. 2019 ended with the emergence of a novel coronavirus, SARS-Co-V2, leading to a pandemic with a high attack rate causing COVID-19 disease. Since the beginning of pandemic pulmonary findings defined for COVID-19 are considered to be pathognomonic hence, chest tomography is suggested to be superior to polymerase chain reaction tests in the diagnosis of adult COVID-19 patients. We present a 16-year-old female patient with HES misdiagnosed as COVID-19 during first peak wave of pandemic depending on chest computed tomography findings (CT) and treated accordingly.
Association of Erectile Dysfunction with a Newly Diagnosed Tinnitus: A Nationwide Pop...
 Yen-Fu Cheng
Sudha Xirasagar

Yen-Fu Cheng

and 4 more

September 01, 2020
Objectives: Given some of the shared organic and psychogenic pathophysiologic mechanisms in tinnitus and erectile dysfunction (ED), we hypothesized that newly-onset tinnitus may be associated with ED. This study aims to explore the relationship between these two medical conditions using a nationwide population-based database. Design: A case-control study Setting: Taiwan Participants: We retrieved data from Taiwan’s National Health Insurance Dataset, 19,329 patients with ED and 19,329 propensity score-matched patients without ED (controls). Main outcome measures: The diagnosis date was the date of the first ED claim for ED, which was the index date for cases. We defined the date of the control patient’s first utilization of ambulatory care during the index year of their matched case as their index date. Tinnitus during a one-year period before the index date was the exposure of interest. Results: Of the 38,658 sampled patients, 1247 (3.23%) had been diagnosed with tinnitus within the year prior to the index date, 792 (4.10%) among cases and 455 (2.35%) among controls. Multiple logistic regression analysis showed that cases were more likely to have had a prior tinnitus diagnosis compared to controls (OR=1.772; 95% CI=1.577-1.992; p<0.001). After adjusting for co-morbid medical disorders and social economic factors, cases were more likely than controls to have a prior diagnosis of tinnitus (OR=1.779, 95% CI=1.582-2.001, p<0.001). Conclusions: This investigation detected a novel association between ED and newly-onset tinnitus. Physicians should be alert to the possibility of developing ED in patients treated for tinnitus.
Thermodynamic stability of hnRNP A1 low complexity domain revealed by high-pressure N...
Jeffrey Levengood
Jake Peterson

Jeffrey Levengood

and 3 more

September 01, 2020
We have investigated the pressure- and temperature-induced conformational changes associated with the low complexity domain of hnRNP A1, an RNA-binding protein able to phase separate in response to cellular stress. Solution NMR spectra of the hnRNP A1 low-complexity domain fused with protein-G B1 domain were collected from 1 to 2,500 bar and from 268 K to 290 K. While the GB1 domain shows the typical pressure-induced and cold temperature-induced unfolding expected for small globular domains, the low-complexity domain of hnRNP A1 exhibits unusual pressure and temperature dependences. We observed that the low-complexity domain is pressure sensitive, undergoing a major conformational transition within the prescribed pressure range. Remarkably, this transition has the inverse temperature dependence of a typical folding-unfolding transition. Our results suggest the presence of a low-lying extended, and fully solvated state(s) of the low-complexity domain that may play a role in phase separation. This study highlights the exquisite sensitivity of solution NMR spectroscopy to observe subtle conformational changes and illustrates how pressure perturbation can be used to determine the properties of metastable conformational ensembles.
Response to: “Heterogeneous phenotypic expression of C1QBP variants is attributable t...
Costanza Lamperti
Silvia Marchet

Costanza Lamperti

and 3 more

September 10, 2020
To the Editor, This letter is a response to the commentary by Dr. Finsterer (Finsterer, 2020) on our paper entitled “Homozygous mutations in C1QBP as cause of progressive external ophthalmoplegia (PEO) and mitochondrial myopathy with multiple mtDNA deletions” (Marchet et al. 2020). Here we try to address the key concerns raised by him.We did not make any distinction between pure PEO and PEO plus, but just considered PEO as a clinical sign which is extremely useful to suggest the presence of a mitochondrial disorder, in particular of primary mitochondrial myopathy (PMM). We stressed the use of the term PEO because it is the one used in OMIM to describe these genetic diseases, with 10 entry genes classified as “Progressive external ophthalmoplegia with mtDNA deletions” (Phenotypic Series - PS157640). Moreover, we stated that PEO usually (and not necessarily) starts with ptosis; indeed, the two patients with C1QBP mutations we described (P1 and P2) presented with ptosis at disease onset. Accordingly, the consortium on Trial Readiness in Mitochondrial Myopathies confirmed that “the most common presentation of PMM is chronic PEO” and that “PEO is usually accompanied by bilateral eyelid ptosis, which is often the presenting symptom” (Mancuso et al. 2017).In the first paper about C1QBP mutations (Feichtinger et al. 2017), all the four reported patients presented with cardiac involvement leading the authors to sustain in the title that biallelic C1QBPmutations cause severe neonatal-, childhood-, or later-onset cardiomyopathy. Although we cannot exclude subtle cardiac dysfunction in our patients (since they did not undergo long-term ElectroCardioGram recordings, trans-esophageal echocardiography, or cardiac MRI), their standard ECGs and echoCGs were normal and thus we still consider valid the main message of our paper: subjects with C1QBP mutations may present with adult-onset PEO/PMM phenotype, without overt cardiomyopathy.We obviously agree that mtDNA genetics is peculiar, and that different level of heteroplasmy may explain the variable phenotypic expression of mtDNA mutations, but we are talking here about mutations in a nuclear gene with an autosomal recessive inheritance. No DNA from any family members was available for segregation studies but we expect that the parents of P1 and P2 (reported to be second-grade and third-grade cousins, respectively) would have tested as heterozygous carrier. Both patients have no siblings. Anyway, detailed clinical investigations of first-degree relatives, not harboring the homozygous C1QBPmutation, would be not informative and hence, in our opinion, useless.The presence of multiple mtDNA deletions is a secondary effect of the mutations in C1QBP , although the exact mechanism linking C1QBP with mtDNA maintenance and stability is not known. The assertion that residual protein amount and different localization of the C1QBPmutations could explain the variable observed phenotypes, including both clinical symptoms and molecular/biochemical defects (mtDNA deletions, mitochondrial respiratory chain - MRC - complex activities, histochemical staining) remains plausible. As suggested by Dr. Finsterer, it is possible that the phenotypic variability ofC1QBP variants is fairly attributable to variable heteroplasmy of secondary mtDNA deletions and/or mtDNA copy number, but it is not possible to test this hypothesis in detail (e.g. throughout assessment of heteroplasmy in different muscle types, including extraocular muscle, and at different time points during disease progression). All the experiments reported in our paper (Marchet et al. 2020) were performed on a single muscle biopsy from quadriceps of the two patients. Densitometry analysis of the Southern blot (Fig. 1C reported in Marchet et al. 2020) revealed 58% and 48% mtDNA deleted species in P1 and P2, respectively. Nevertheless, an exponential accumulation of multiple mtDNA deletions has been reported in post-mitotic tissues during aging (Cortopassi et al. 1992), and thus we cannot exclude an influence of the age at biopsy and of duration from onset disease on this result.Another important issue is related to the presence of mosaic of cells in the same tissue, which is expected also in our patients based on histological analyses showing fibers with different features likely related to different levels of mtDNA deletions. Accordingly, previous single-cell analysis has revealed that mtDNA deletions are distributed as a mosaic of affected and non-affected cells (He et al. 2002). While the link between heteroplasmy level and biochemical/clinical phenotype is well established in patients with single large‐scale mtDNA deletion, it is more complex in patients with multiple mtDNA deletions, where each muscle fiber may contain different, and more than one, mtDNA deleted species (Lehman et al. 2019).Regarding mtDNA copy number, we did not assess it directly but we expect the same limitations reported above, because of experimental data from a single specimen characterized by intercellular heterogeneity. Nevertheless, some indirect indications can be obtained by already reported histological and biochemical findings. Muscle cells with high levels of mtDNA deletions typically show mitochondrial proliferation as compensatory mechanism, which is reflected by the presence of Ragged Red Fibers (RRF). Moreover, the activity of citrate synthase (CS) is often used as a quantitative marker for mitochondrial mass. In both P1 and P2, we observed the presence of many RRF but the CS activity in total muscle homogenate was in the normal range (118% and 100% of the controls’ mean for P1 and P2, respectively) again confirming variable heteroplasmy in different fibers but indicating an overall normal amount of mitochondria and, roughly, of mtDNA copy number.All the above considerations are useful to explain also the last concern by Dr. Finsterer, i.e. why biochemical investigations of P2 were normal. Notably, the histochemical staining for cytochrome c oxidase (i.e. complex IV) was decreased in scattered fibers from P2, despite biochemical assay showed normal values for MRC complexes. It has already been reported that the activities of respiratory complexes in muscle from PEO patients range from normal to about 50% of the controls’ mean (Viscomi & Zeviani, 2017). Likewise, normal MRC activity has been observed in several patients presenting with mtDNA deletions caused by mutations in nuclear genes (e.g. POLG, POLG2, RNASEH1 …). More recently, by single cell studies some authors demonstrated that genetic defects do not strictly correlate with MRC deficiency in fibers with multiple mtDNA deletions (Lehman et al. 2019).In conclusion, the very limited number of C1QBP cases reported up to now and their allelic heterogeneity hamper to define any genotype–phenotype correlations, but nevertheless indicate a huge clinical spectrum associated with C1QBP mutations, ranging from early-onset severe cardiomyopathy to adult-onset PEO/PMM.CONFLICT OF INTERESTSThe authors declare that there are no conflicts of interests.
Can you make a boat?
Alejandra Escovar

Alejandra Escovar

September 02, 2020
Summary: K-2 Students will review the steps and importance of the Engineering Design Process through and engineering design challenge. They must make a boat that will travel to the other side of a test tank safely. Key words:Engineer, problem, define, constraint, solution, prototype, test, improve, sink, float. Learning Outcomes:After the students complete this challenge they should be able to:Describe the different steps of the Engineering Design Process (EDP)Describe how engineers find the solutions to problems and make use of the materials they have aroundDescribe their experience and the steps they took to solve the challenge using the EDPStandards:Next Generation Science StandardsK-2-ETS1-1. Ask questions, make observations, and gather information about a situation people want to change to define a simple problem that can be solved through the development of a new or improved object or tool.ETS1.A: Defining and Delimiting Engineering Problems: A situation that people want to change or create can be approached as a problem to be solved             through engineering.  Asking questions, making observations, and gathering information are helpful in thinking about problems.    Before beginning to design a solution, it is important to clearly understand the problem. K-2-ETS1-2. Develop a simple sketch, drawing, or physical model to illustrate how the shape of an object helps it function as needed to solve a given problem.ETS1.B: Developing Possible Solutions:     Designs can be conveyed through sketches, drawings, or physical models. These representations are useful in communicating ideas for a problem’s solutions to other people. K-2-ETS1-3. Analyze data from tests of two objects designed to solve the same problem to compare the strengths and weaknesses of how each performs.ETS1.C: Optimizing the Design Solution: Because there is always more than one possible solution to a problem, it is useful to compare and test designs.    ISTE Standards1 Empowered Learner 1a- Students articulate and set personal learning goals, develop strategies leveraging technology to achieve them and reflect on the learning process itself to improve learning outcomes. 1d- Students understand the fundamental concepts of technology operations, demonstrate the ability to choose, use and troubleshoot current technologies and are able to transfer their knowledge to explore emerging technologies. 3 Knowledge Constructor 3a- Students plan and employ effective research strategies to locate information and other resources for their intellectual or creative pursuits. 
Continuous flow synthesis of N‑(2‑aminophenyl) benzamide with high selectivity and it...
Qilin Xu
Hongmiao Yao

Qilin Xu

and 7 more

September 10, 2020
The monobenzoylation of o-phenylenediamines (DA) is an important process to synthesis N‑(2‑aminophenyl) benzamide (MP), which is a key intermediate of many active compounds. But the monoacylation is difficult to control because this process is a kind of consecutive reaction system and the two amine groups located in a similar chemical environment. To understand the effects of reaction parameters on the selectivity and further optimize operating conditions, a microreactor platform was developed to evaluate the kinetics of the acylation reaction of DA and benzoic anhydride (BH). A kinetic model was established, and the reaction order of each reactant, the values of kinetic constants, pre-exponential factors and activation energies were determined. Validation experiments showed the model is in good agreement with the experimental results. The model simulation indicated that high reaction temperature and molar ratio of DA and BH is necessary to improve reaction efficiency and selectivity.
← Previous 1 2 … 2417 2418 2419 2420 2421 2422 2423 2424 2425 … 2754 2755 Next →

| Powered by Authorea.com

  • Home