A RBD design with two replications was used to seed 35 distinct genotypes of cucumber obtained from various places. In order to examine the morphological variety, thirty different productivity-related features were observed and the mean data was submitted to D2 statistics. For all of the variables examined, the variance analysis indicated huge variations in the genotypes. It was shown that 16 of the 30 characteristics had a role in genetic divergence. Adopting Tocher's strategy resulted in five clusters. Twenty-six genotypes belonged to the biggest cluster, followed by cluster II. There was just one genotype in each of the three isolated clusters. Cluster I was the most diverse within itself, whereas Cluster II was the second most diverse. Distance between clusters IV and III was greatest, while that of III with I was the shortest. There were only 23 polymorphic RAPD primers out of the 40 examined in the molecular characterisation process. There was an average of 6.60 bands for each primer. Polymorphism was seen in all 19 primers. Ward's technique of clustering produced a dendrogram from 35 genotypes, although only two primary groups were established. The present study revealed that there is no similarity in clusters formed based on morphological markers and molecular markers. The divergent genotypes identified were can be further utilized in heterosis breeding programme. Genotype UDYC-25 was identified as superior with highest fruit yield per vine