Omega-3 long-chain polyunsaturated fatty acids (n-3 LC-PUFA) dietary acquisition is beneficial for survival, reproduction, and brain development in many vertebrates including fishes, positively affecting their cognitive abilities. However, how n-3 LC-PUFA impact fish behaviour, and cognition in natural habitats remains unclear. Populations and individuals of the same species often vary in their capacities to synthesize n-3 LC-PUFA. This may affect their sensitivity to dietary intake of these nutrients and, in turn, their cognitive traits and ecological performance. Here, we tested how dietary n-3 LC-PUFA affects behavioural and cognitive traits of brown trout Salmo trutta from two lacustrine and three riverine populations. We combined laboratory behavioural tests with experiments in semi-natural stream mesocosms to see how trout can acquire resources in natural environment (i.e., prey size and taxonomic composition in their stomach contents). Trout raised on a high n-3 LC-PUFA diet showed less bold behavioural types and better cognitive performance in laboratory tests, and capacity to capture and consume larger prey in the stream mesocosm. Additionally, we observed inter-population differences in behaviour and cognition, although these differences were independent from whether fish were from lakes or river.