Background and Purpose The purpose of our research was to investigate the therapeutic effect of Panax notoginseng polysaccharides (PNP) in ameliorating colitis and revealing its protective mechanism of the gut vascular barrier. Experimental Approach PNP was extracted using a process of pure water extraction and then precipitated by ethanol. Next, the structural properties of PNP were analyzed, including the purity of the polysaccharides, monosaccharide composition, and molecular weight. Utilizing the DSS to induce acute colitis model, ELISA assessed the levels of inflammation-related factors in serum. The types and functional expressions of immune cells were examined using flow cytometry. Additionally, immunofluorescence was applied to evaluate the integrity of the multiple gut barrier. The gut microbiota was assessed, and its mechanism of action was investigated through 16S rRNA sequencing and FISH techniques. Transplanting PNP feces into DSS-induced mice to determine the contribution of intestinal flora to PNP efficacy. Key Results Pharmacological experiments indicate that PNP can ameliorate intestinal inflammatory reactions, reduce bacterial tissue invasion, as well as maintain the integrity of the multiple gut barrier, including epithelial barrier, mucus barrier, and vascular barrier. PNP-FMT obtained similar efficacy results. Mechanically, PNP treatment modulated the gut microbiota and increased ILC3-secreted IL-22 to repair the gut vascular barrier. Conclusions and Implications The findings indicate that PNP effectively repairs intestinal epithelial and vascular barrier damage by enhancing the function of ILC3 through microbial mediation.