Urban environments provide a unique opportunity to investigate the impacts of novel stressors on organismal performance. Marine intertidal exist at the transition from sea to land, where they are exposed to a unique suite of stressors including those associated with wastewater outflow, sewage effluent and coastline development. While studies have shown that compounds found in wastewater, including endocrine disrupting chemicals (EDCs) can affect survival and development of marine organisms the mechanisms for those affects are relatively unknown. Our study investigates the developmental and transcriptomic responses to common EDC, nonylphenol, using the Pacific purple sea urchin (Strongylocentrotus purpuratus) as a model system. Beginning exposure prior to fertilization, we found that nonylphenol impacts only materialize 24 hours post fertilization when the embryonic transcriptome begins to be expressed. In addition, survival was lowest at the lowest concentration of nonylphenol. Transcriptomic patterns also varied by chemical concentration and developmental stage, with ribosomal genes differentially expressed among different levels of exposure at both early and later larval stages. We also find a strong parental effect survival, morphology, developmental abnormalities and gene expression vary among mate pairs despite all of the adult urchins coming from the same population. This potentially suggesting standing within-population variation, which may impact evolutionary responses to anthropogenic stress. Overall, our study finds that nonylphenol affects survival, morphology, and gene expression at early life history stages, and that more work needs to be done to understand intraspecific variation in those effects.