Background: Data on respiratory virus disease burden in China is limited, as most studies focus on single viruses and lack population-based incidence and hospitalization rates. Methods: We integrated multi-source Chongqing data (Oct 15, 2023–Apr 30, 2025) to analyze seasonality and age-related trends of six viruses, identified SARI risk factors, and developed a modified multiplier model to estimate virus-associated ARI incidence and hospitalization rates. Results: We included 16,363 respiratory infection patients (12,669 outpatients, 3,694 inpatients). Most viruses resumed pre-COVID-19 seasonal patterns, with HRV and HMPV showing distinct seasonality. IFV peaked in adolescents/adults; RSV and HPIV affected infants and the elderly; HAdv, HRV, and HMPV were most prevalent in preschoolers. RSV carried a significantly higher SARI risk than other viruses (adjusted odds ratio: 1.52 vs HRV to 7.88 vs IFV). Incidence and hospitalization rates (per 100,000 person-years) of HRV (30,183; 2,153), HMPV (22,774; 514), RSV (22,181; 2,065), IFV (13,086; 807), HPIV (7,824; 556), and HAdv (6,991; 1,487) were highest in children under 5. Hospitalization rates rose again in those ≥ 60: HRV (170), RSV (80), IFV (70), HMPV (54), HAdv (27), HPIV (23). Conclusion: Note household transmission of child–elderly pattern pathogens. Multi-source data integration enables population-level evaluation of respiratory virus disease burden.