Yang Wu

and 10 more

Migratory species are acutely vulnerable to habitat loss, especially for migratory birds that rely on multiple stopover sites during migration. Typically, migratory birds show less exploratory behavior as they age, i.e., their migration routes typically become more fixed, which leads to higher vulnerability to habitat change. Indeed, due to habitat loss and land use changes in the East Asian-Australasian Flyway, most waterbird populations have rapidly declined, but there are some notable exceptions. We hypothesized that species with stable or growing population may be those able to maintain migration behavioral flexibility into adulthood, enabling them to cope better with environmental change. To test this hypothesis, we used satellite tracking technology to monitor the movement behaviors of Pied Avocets Recurvirostra avosetta, an increasing species highly adapted to artificial wetlands in the East Asian-Australasian Flyway. We compared the migration behaviors of 48 adult and 20 juvenile Pied Avocets in eastern China. In the first two years of life, Pied Avocets performed relatively limited movements. In contrast, some adults migrated to much more southerly wintering grounds or more northerly breeding sites, and occasionally pioneered entirely new flight paths. Additionally, adult birds showed greater variability in their movements during the non-migration period, indicating that older individuals retain behavioral flexibility, likely in response to environmental changes. This suggests that flexible migration strategies in adult animals may enhance resilience to habitat alterations and might help predict which species will be especially vulnerable to environmental change.

Hui Wang

and 5 more

Simple sequence repeats (SSRs) are widely used genetic markers in ecology, evolution and conservation even in the genomics era, while a general limitation to their application is the difficulty of developing polymorphic SSR markers. Next-generation sequencing (NGS) offers the opportunity for the rapid development of SSRs; however, previous studies developing SSRs using genomic data from only one individual need redundant experiments to test the polymorphisms of SSRs. In this study, we designed a pipeline for the rapid development of polymorphic SSR markers from multi-sample genomic data. We used bioinformatic software to genotype multiple individuals using resequencing data, detected highly polymorphic SSRs prior to experimental validation, significantly improved the efficiency and reduced the experimental effort. The pipeline was successfully applied to a globally threatened species, the brown-eared pheasant (Crossoptilon mantchuricum), which showed very low genomic diversity. The 20 newly developed SSR markers were highly polymorphic, the average number of alleles was much higher than the genomic average. We also evaluated the effect of the number of individuals and sequencing depth on the SSR mining results, and we found that ten individuals and ~10X sequencing data were enough to obtain a sufficient number of polymorphic SSRs, even for species with low genetic diversity. Furthermore, the genome assembly of NGS data from the optimal number of individuals and sequencing depth can be used as an alternative reference genome if a high-quality genome is not available. Our pipeline provided a paradigm for the application of NGS technology to mining and developing molecular markers for ecological and evolutionary studies.