Aims To compare the pattern of psychotropic drug prescriptions in adolescents who started a drug therapy after the COVD-19 pandemic and in adolescents who began before the pandemic. Methods A healthcare database from Italy’s Lombardy region was analyzed to compare the prescription profiles of psychotropic drugs (N05 and N06 groups of the Anatomical Therapeutic Chemical classification system) and access to healthcare services among two cohorts of adolescents, aged 12–17. One cohort received their first psychotropic drug prescription in 2018 (pre-pandemic), and the other received theirs in 2021 (post-pandemic). The incidence, number of prescriptions within 12 months of the initial prescription, therapy persistence at the end of the observation period, and prevalence of polytherapy (prescription of more than one psychotropic class) were evaluated. Additionally, access to healthcare services was monitored before and after the initial prescription. Results The incidence increased from 3.01 per 1,000 in 2018 to 4.97 per 1,000 in 2021 (incidence rate ratio [IRR] 1.64; 95% CI 1.55–1.74), with the largest rise in girls aged 12–14 (IRR 2.35; 95% CI 2.01–2.77). Among girls, the mean number of prescriptions (+39%), prevalence of polytherapy (+57%), and persistence at 12 months (+38%) all increased post-pandemic, while no significant changes were observed among boys. Prior healthcare service use rose from 58.4% in 2018 to 65.7% in 2021. Conclusions The increase in incidence and intensity of psychotropic drug prescriptions in adolescent girls confirms the existence of gender differences in the pandemic’s impact on mental health.