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Fractals through modified Jungck iteration scheme and analysis
Arif

Arif Rafiq

June 01, 2024
In this paper, we introduce a novel Jungck iteration scheme characterized by second-order convergence. We verify its validity and accuracy using polynomiography. Additionally, we establish that existing well-known iteration schemes for approximating the fixed point of a general mapping exhibit identical convergence rates under specific conditions.
TOPIC: STEP-BY-STEP TLH.
Abhinibesh Chatterjee
Annesha Dutta

Abhinibesh Chatterjee

and 2 more

June 01, 2024
Total laparoscopic hysterectomy (TLH) is the complete hysterectomy including transection of the uterine vessels and opening/closure of the vaginal vault performed laparoscopically. This procedure can be performed as an alternative to total abdominal hysterectomy in many cases. In this short communication, we would like to share our experience of 1000 cases of total hysterectomy done laparoscopically witbout having caused any intraoperative or post operative complications.
Advances in the Diagnosis and Management of Endometriosis: A Comprehensive Review
Yingying Chen
Shanzy Waseem

Yingying Chen

and 2 more

June 01, 2024
Endometriosis is a common gynecological condition characterized by the presence of endometrial-like tissue outside the uterus, leading to chronic pelvic pain and infertility. This review aims to provide an overview of recent advances in the diagnosis and management of endometriosis. The article discusses the pathogenesis, clinical presentation, diagnostic modalities, and treatment options for endometriosis. Additionally, it highlights emerging technologies and novel therapeutic approaches that show promise in improving patient outcomes. By summarizing the current state of knowledge, this review aims to guide clinicians in providing optimal care for patients with endometriosis.
DELAYED CORD CLAMPING VERSUS UMBILICAL CORD MILKING IN TERM AND NEAR-TERM NEONATES- A...
Aashim Garg
Shashank Shekhar

Aashim Garg

and 5 more

June 01, 2024
Aim: To compare the effect of delayed cord clamping versus milking of umbilical cord on initial hematocrit in term and near-term neonates. Methods: This randomized controlled trial included 374 pregnant women of more than 34 weeks period of gestation. They were randomized into umbilical cord milking group and delayed cord clamping group. In umbilical cord milking group, 119 underwent vaginal delivery and 68 underwent caesarean section. In delayed cord clamping group, 117 underwent vaginal delivery and 70 underwent caesarean section. Results: Mean hematocrit in cord sample was 47.02±7.13% in umbilical cord milking group and 48.04±8.36% in delayed cord clamping group and the difference was not statistically significant (p=0.21). Mean hematocrit at 30±6 hours was 54.48±5.84% in umbilical cord milking group and 50.9±7.1% in delayed cord clamping group and the difference was statistically significant(p=0.01). Requirement of phototherapy in umbilical cord milking group was 18.18% and in delayed cord clamping group was 19.25%(p=0.79). Rate of neonatal intensive care unit admissions was 2.67% in umbilical cord milking group and 7.49% in delayed cord clamping group(p=0.034). Conclusion: Umbilical cord milking lead to significant increase in hematocrit levels without increasing the requirement of phototherapy and neonatal intensive care unit admissions. Hence, umbilical cord milking can be used as an alternative to delayed cord clamping in both term and near-term neonates.
Novel regulators identified by quantitative phosphoproteomics analysis during ticagre...
Jiangman Song
Zhe Xu

Jiangman Song

and 7 more

June 01, 2024
Purpose: To study the antiplatelet mechanisms of ticagrelor. Experimental design: Platelets underwent activation with 20 μM ADP for 30 seconds followed by inhibition with 2 nM ticagrelor for another 30 seconds. Mass-spectrometry-based phosphoproteomic technique was applied to obtain phosphorylation spectra in platelets. Results: We successfully quantified 2285 phosphopeptides with high confidence in 1189 phosphoproteins. Compared with intact platelets, ADP-activated platelets showed significant upregulation of PDE5ASer102 and downregulation of 178 phosphopeptides in 154 proteins. Gene Ontology analysis showed that downregulated phosphoproteins were enriched in molecular functions and pathways associated with RNA processing and surveillance. After ticagrelor treatment, we identified 53 significantly regulated phosphopeptides, including 17 upregulated and 36 downregulated, in 45 phosphoproteins. Eight phosphopeptides in STIM1, DENND4C, TNIK, BCL9L, DBN1, DOCK10, FRMD4B, and PRKAR2B were significantly downregulated after ADP stimulation and significantly upregulated after adding ticagrelor. They were mainly implicated in regulation of Ca2+ flow, Wnt/β-catenin signaling, and cytoskeleton remodeling, suggesting their potential role as mediators in ticagrelor-related signaling pathways. Conclusions and clinical relevance: By sequential activation and inhibition of platelets using mutual competitive inhibitors, ADP and ticagrelor, we demonstrated alternations in phosphorylation status of phosphoproteins, which could help to interpret the mechanism of bleeding complications associated with ticagrelor.
Ecological memory contributes to a spatial mismatch in water quality trends between t...
Abigail S L Lewis
daniel.mercado

Abigail S L Lewis

and 2 more

October 06, 2025
AbstractEcosystem states are often influenced by both concurrent and antecedent environmental drivers. However, the relative importance of antecedent conditions varies within and among ecosystems. Here, we analyzed long-term depth-profile data from 382 temperate lakes across 10 countries to assess how differential changes in spring vs. summer air temperature mediate summer water quality. We found that summer bottom-water conditions were more associated with spring air temperatures, while surface-water conditions were more associated with summer air temperatures. The relative influence of spring vs. summer temperature was mediated by lake morphometry, stratification, and latitude. Across these lakes, summer air temperatures have increased more rapidly than spring air temperatures, potentially contributing to a growing thermal difference between surface and bottom waters (median = +0.5 ºC/decade). Consequently, our results demonstrate that predicting the ecological impacts of climate change may require considering spatial differences in ecological memory within ecosystems.1. INTRODUCTIONWhile anthropogenic climate change has driven global increases in air temperature, the rate of warming varies seasonally throughout the year and spatially worldwide (Balling et al. 1998; IPCC 2023; Kharin et al. 2013; Santer et al. 2018; Stine et al. 2009). For example, winter (December, January, February) air temperatures have increased approximately four times as quickly as summer (June, July, August) air temperatures in the Arctic (Bintanja & van der Linden 2013), though the season with the most rapid change in temperature differs around the world (IPCC 2023; Santer et al. 2018). As the many components of an ecosystem often have varying sensitivity to air temperatures throughout a year, anticipating the effects of future climate change will require characterizing seasonally-distinct impacts of air temperature on ecological function. Diverging seasonal air temperature trends may contribute to phenological and spatial mismatches in the effects of climate change. Phenological mismatches occur as climate change alters the temporal dynamics of ecological interactions, including the timing of migration, breeding, and predation (Straile et al. 2015). Similarly, climate change is also altering the spatial dynamics of ecological interactions, creating spatial mismatches in habitat quality and connectivity within and among ecosystems (Schweiger et al. 2008). However, while phenological mismatches are well documented in populations and communities across multiple ecosystems (Straile et al. 2015), spatial mismatches in climate responses within ecosystems have received less attention.Freshwater lakes provide a compelling example of how spatial mismatches in climate responses may occur within one ecosystem (Del Giudice et al. 2018; Dugan 2021; Oleksy & Richardson 2021; Piccolroaz et al. 2021). While surface waters are directly impacted by concurrent air temperatures throughout the year, summer thermal stratification creates two distinct layers in many temperate lakes, limiting the transfer of heat and mass between surface and bottom waters (MacIntyre & Hamilton 2024; Figure 1). Consequently, in lakes that experience summer thermal stratification, summer bottom water conditions may be more responsive to climate change during the spring mixing period than during the concurrent summer period (Adrian et al. 2012; Dugan 2021; Gerten & Adrian 2001; Oleksy & Richardson 2021; Figure 1). If spring and summer air temperatures are changing at differing rates with climate change, this could potentially produce misaligned trends in surface vs. bottom water temperature and oxygen dynamics, with implications for habitat availability, biogeochemical cycling, and water quality. Here, we refer to the relatively greater influence of antecedent (i.e., spring) vs. concurrent (i.e., summer) conditions as ecological memory, following Ogle et al. (2015), Dugan (2021), Pilla et al. (2023), and others. Spatial mismatches in water quality trends between surface and bottom waters have both ecological and scientific implications. If surface temperatures warm faster than bottom-water temperatures, cooler bottom waters may serve as a refugia for cold-water organisms (Jane et al. 2024; Rose et al. 2016). Conversely, elevated bottom water temperature is expected to drive decreased dissolved oxygen (DO) solubility and increased rates of decomposition in bottom waters, both of which could decrease DO concentrations during the summer stratified period and degrade habitat quality for aerobic organisms (Pace & Prairie 2005; Yvon-Durocher et al. 2012; Figure 1). If bottom-water temperatures change at a different rate than surface temperatures (e.g., following Pilla et al. 2020), temperature-driven changes in bottom-water habitat quality would not necessarily be detected from summer surface-water measurements, which are much more common than bottom-water measurements across lakes (Pilla et al. 2020; Schneider & Hook 2010).As ecological memory underlies the potentially divergent effects of seasonal air temperature on surface and bottom water conditions in lakes, understanding the potential for spatial mismatch requires characterizing how ecological memory varies across lakes with differences in water chemistry, morphometry, and climate (Dugan 2021; Gerten & Adrian 2001). In bottom waters, cross-seasonal ecological memory is facilitated by summer thermal stratification (Figure 1), and will likely be strongest in lakes that exhibit strong, stable thermal stratification throughout the summer. However, these patterns may be further modulated by the morphometric, geographic, and biological characteristics of a given lake. For example, in lakes where high surface productivity results in variable inputs of phytoplankton biomass to bottom waters (Lewis et al. 2024), summer air temperature may be a relatively more important driver of summer bottom-water DO dynamics compared to lakes with low surface productivity. Similarly, latitudinal gradients regulate the degree of seasonality in air temperature, solar radiation, and other environmental drivers (Lewis, Jr. 1996) potentially resulting in latitudinal differences in cross-seasonal ecological memory. Ultimately, the relationships between lake characteristics and cross-seasonal ecological memory remain largely untested because they can only be identified through analysis of long-term depth profile data across many widespread lakes. While surface-water dynamics can be characterized across hundreds of thousands of widespread lakes using remote sensing (Khandelwal et al. 2022; Topp et al. 2021; Yang et al. 2022), bottom-water data collection is typically resource intensive, logistically challenging, and expensive, as it entails either physically traveling to the waterbody and conducting manual profiles from a boat or purchasing and maintaining in situ sensors (Pilla et al. 2020). Consequently, bottom-water data availability is much more limited across lakes.Here, we compiled and analyzed a large dataset of depth profile data from hundreds of stratified lakes to understand the influence of seasonal air temperature dynamics on surface and bottom-water temperature and DO. We focused on water temperature and DO due to the critical role that these environmental variables play in determining lake habitat quality and ecological function, and because these variables have been broadly monitored across many lakes over time (Jane et al. 2021; Pilla et al. 2020; Richardson et al. 2017). Our analysis addressed two primary research questions: Q1) What period of air temperature exerts the strongest influence over summer water temperature and DO dynamics in surface and bottom waters of temperate lakes? and Q2) Which lake characteristics control the relative influence of antecedent vs. concurrent air temperatures on surface and bottom-water temperature and DO? Through these analyses, we provide an assessment of how seasonal air temperature dynamics may contribute to spatial mismatches in water quality amidst a changing climate. 2. METHODS2.1 Dataset and data processingTo explore associations between seasonal air temperatures and water quality dynamics, we compiled and analyzed a dataset of temperature and DO profiles from 382 temperate lakes (Lewis et al. 2023). This dataset includes lakes across 10 countries and 4 continents (Figure 2), with a median depth of 15 m (Zmax range: 3–370 m) and median surface area of 1.19 km2 (range: 0.011–1269.09 km2). The median time series duration was 30 years, and all lakes had at least 15 years of data. Detailed metadata descriptions are provided by Lewis et al. (2023). All data analyses were performed in R, version 4.3 (R Core Team, 2023), and analysis code is archived on Zenodo (Lewis 2025).  2.1.1 Summer in-lake metricsWe calculated mean summer surface- and bottom-water temperature and DO for each lake-year using the top 0–1 m of the lake and the bottom 1 m of sampled depths, respectively. For these calculations, we interpolated summer temperature and DO profiles to a 1-m depth resolution, following Jane et al. (2021). We then calculated mean surface and bottom temperature and DO concentrations during the summer of each lake year, which was defined as July and August in the northern hemisphere and January and February in the southern hemisphere. Data availability differed among lakes and variables, with a median of two profiles per summer (Table S1, Figure S1). Changing the duration of time defined as “summer” or number of profiles included in the analysis did not qualitatively affect results (Figure S1; Figure S3). Changes in spring air temperature may affect bottom-water DO via multiple pathways, including altered stratification onset, oxygen solubility, and rates of oxygen demand throughout the summer stratified period (Figure 1). To assess whether spring air temperatures affected biogeochemical processing rates during the summer, we calculated bottom-water oxygen demand for each lake year. Specifically, we used bathymetric contours from Lewis et al. (2023) and interpolated DO profiles to calculate volume-weighted hypolimnetic oxygen concentrations on each measurement date in lake-years that exhibited a period of summer thermal stratification. We then calculated volume-weighted hypolimnetic oxygen demand (VHOD) as the linear rate of decline in volume-weighted DO concentrations during the stratified period (Lewis et al. 2024).We calculated the maximum buoyancy frequency throughout the water column in 1-m intervals to assess the strength of thermal stratification. Maximum buoyancy frequency was calculated for each profile using the rLakeAnalyzer R package (Winslow et al. 2019), then averaged throughout the summer of each lake-year.  2.1.2 Climate dataWe collated daily 2-m air temperature for 1980–2022 from the ERA5 climate reanalysis (Hersbach et al. 2019). ERA5 is a commonly used climate reanalysis product and provides meteorological data on a 0.25-degree global grid (Hersbach et al. 2019). Meteorological data were extracted from the nearest grid cell for each lake. 2.2 Interannual variabilityTo assess which sub-annual periods of air temperature are most strongly correlated with interannual variability in summer water temperature and DO dynamics in each lake, we calculated the relationship between mean air temperature in 30-day rolling windows (January–August in the Northern Hemisphere, offset by six months in the Southern Hemisphere) and four summer focal variables: surface-water temperature, bottom-water temperature, bottom-water oxygen demand, and bottom-water DO concentration (following e.g., Huber et al. 2010). For this analysis, we used partial Spearman’s correlations that accounted for measurement year to isolate the role of interannual variability, as opposed to long-term trends (see Section 2.3 and Figure S4). We included all lakes with at least 15 years of paired data for air temperature and any of the four focal lake variables from 1980–2022 (surface-water temperature n = 365; bottom-water temperature n = 365, bottom-water oxygen demand n = 157). For DO, we only included lakes that had a median DO >1 mg/L (n = 213), as the physical constraint that DO cannot decrease below 0 mg/L limited our ability to assess correlation between air temperature and summer DO in lakes that frequently experienced anoxia. Changing the duration of the rolling mean window did not substantially alter results (Figure S5).  2.2.1 Cross-Seasonal Ecological MemoryWe quantified the relative influence of summer vs. spring air temperatures on each summer focal lake variable (surface-water temperature, bottom-water temperature, bottom-water oxygen demand, and bottom-water DO concentration). First, we calculated the correlations between our summer focal variables and all possible 30-day rolling windows of mean spring air temperature to identify which window of air temperature exhibited the strongest correlation. For this analysis, we used spring air temperatures during March–May in the Northern Hemisphere, with Southern Hemisphere dates offset by six months. We then repeated this analysis using all possible 30-day rolling windows in the Northern Hemisphere’s July and August (Southern Hemisphere dates offset by six months). We subtracted the maximum summer correlation from the maximum spring correlation for each focal variable, to calculate a Cross-Seasonal Ecological Memory (CSEM) value for each lake (Figure S6). Consequently, positive values of CSEM indicate a stronger correlation with antecedent spring air temperatures and negative values indicate a stronger correlation with concurrent summer air temperatures (Figure S6). Because air temperature is mechanistically expected to be positively correlated with water temperature and oxygen demand but negatively correlated with bottom-water oxygen concentrations (Figure 1), we used the absolute value of the minimum (most negative) correlation for bottom-water DO and the absolute value of the maximum (most positive) correlation for all other variables. The period of air temperatures that were identified as “spring”—March through May in the Northern Hemisphere—encompass the typical onset of thermal stratification across the lakes in this dataset (Figure S7). Conversely, the period identified as “summer”—July and August in the Northern Hemisphere—match the timing of in-lake measurements used for summer water quality means (2.1.1 Summer in-lake metrics). Results did not qualitatively change if we restricted spring dates to March and April to match the two-month duration of summer air temperature dates (Figure S8). Using the maximum correlation from spring and summer rather than, e.g., the median correlation throughout these periods, allowed us to isolate the specific windows of air temperature that were most important in driving variation in each summer focal lake variable, as seasonal phenology (e.g., timing of spring thaw and stratification onset) varies with lake size, geographic location, wind dynamics, and other factors (Magee and Wu 2017; Woolway et al. 2021). However, results also did not differ qualitatively between median and maximum correlations (Figure S9). While our analysis primarily focused on DO concentrations, rather than DO percent saturation, we re-ran the CSEM calculations and found that the same patterns were observed for percent saturation (Figure S10). 2.2.2 Random Forest RegressionsWe assessed how the relative influence of spring vs. summer air temperature (i.e., CSEM) may vary in the surface and bottom waters of many lakes worldwide using random forest analyses. For these analyses, we predicted CSEM of our four focal variables based on a consistent set of three explanatory variables. The candidate explanatory variables we selected were variables that (1) could be assessed using available data and (2) were expected to potentially mediate the influence of spring air temperatures on summer water quality: lake maximum depth, stratification strength (median buoyancy frequency at the thermocline in summer), and latitude (absolute value). Correlations among explanatory variables are presented in Figure S11. We evaluated each random forest model using out-of-bounds R2 and Kling–Gupta Efficiency (KGE), then assessed the importance of each explanatory variable for each focal response by calculating the percent increase in mean squared error (MSE) that results from removing that variable from the random forest model. To assess the relationship between each driver and CSEM, we plotted the partial dependence of CSEM on each driver across the range of observed driver values. We repeated this analysis for lakes with 20+ years of data to assess the extent to which results depended on data availability (Figure S12). All random forest analyses were performed using the randomForest package in R (Breiman et al. 2024). 2.3 Multiannual trendsTo assess the relationship between decadal water temperature and seasonal air temperature trends, we calculated trends in each variable across all lakes, using Sen’s slope as a non-parametric trend statistic. We accounted for variation in seasonal phenology across lakes by using the spring and summer air temperature dates identified in section 2.2.1, and we limited the years of air temperature data to the duration of in-lake data available at each lake. Trend analyses were performed using the trend R package (Pohlert 2023). We used Spearman’s correlations to assess the relationship between multiannual spring and summer air temperature trends and bottom-water temperature trends, as well as the spatial mismatch in water temperature changes. We then calculated non-parametric trends (via Sen’s slope) in the magnitude of difference between surface and bottom water temperature, and we plotted the density distribution of these trends across all lakes.  2.4 ISIMIP-lakes model-based verificationWhile our study was focused on empirical data analysis across hundreds of temperate lakes, we sought additional mechanistic validation of the cross-seasonal ecological memory calculations by analyzing within-lake patterns over multiple decades with hydrodynamic modeling. We compiled daily water temperature estimates for the 43 lakes in our dataset that were modeled as part of the Inter-Sectoral Impact Model Intercomparison Project lakes sector (ISIMIP global lakes v3a). For this analysis, we used output from the widely-used General Ocean Turbulence Model (GOTM), which was also driven by ERA5 climate data (Golub et al. 2022). We limited our analysis to years ≥1980 to correspond with our empirical analyses above. Using the ISIMIP-modeled daily water temperatures of these 43 lakes, we re-ran the analyses described in sections 2.1 and 2.2 to assess whether the timing of stratification onset was related to the timing of peak correlation between spring air temperature and summer bottom-water temperature across lakes. Modeled daily water temperature output allowed us to precisely quantify the timing of summer stratification onset in each lake-year, which we defined as the last date before July 1 (Northern Hemisphere) or December 1 (Southern Hemisphere) with a water density threshold of <0.1 kg/m3. 3. RESULTSWe found strong support for a cross-seasonal ecological memory effect that may drive a spatial mismatch in water quality trends between surface and bottom waters of lakes worldwide (Figure 3). While summer surface-water temperature tended to be positively correlated with summer air temperatures, summer bottom-water temperature, bottom-water oxygen demand, and summer bottom-water DO (concentrations and percent saturation) tended to be more closely correlated with spring air temperatures (Figures 3, S10, S13, S14). The magnitude of cross-seasonal ecological memory in surface and bottom waters was mediated by lake characteristics. Across all surface and bottom water variables, cross-seasonal ecological memory increased with increasing thermal stratification (as buoyancy frequency). However, the effect of buoyancy frequency on ecological memory was stronger in bottom waters than surface waters (Figure 4). Omitting buoyancy frequency as a driver of cross-seasonal ecological memory led to a 37% increase in MSE for bottom-water temperature, compared to 20% in surface waters. Deeper lakes exhibited increased CSEM for bottom water temperature and decreased CSEM for surface water temperature, while high latitude lakes exhibited decreased CSEM for both surface-water temperature and bottom-water DO (Figure 4, S15). The amount of variation in CSEM that was explained by driver variables was higher for bottom-water temperature than surface-water temperature or bottom-water DO dynamics (Figure 4).The specific dates of spring air temperature that were most correlated with summer bottom-water temperature varied across lakes. Analyzing modeled water temperature from the 43 ISIMIP lakes, we found a strong positive association between median stratification onset date and the day of air temperature that was most correlated with bottom-water temperature (left-aligned 30-day rolling mean; Figures S7, S16). Likewise, in a subset of lakes where we were able to empirically estimate stratification onset (n = 27), the median stratification onset date corresponded with the window of air temperature that was most correlated with summer bottom-water temperature (Figure S13).Across the lakes in this dataset, spring air temperature trends were smaller and more variable than summer air temperature trends (mean±SD = 0.09±0.54 ºC/decade in spring vs. 0.23±0.3 ºC/decade in summer from 1980–2022; Figure 5). Decadal trends in summer bottom-water temperature were more correlated with spring air temperature trends than summer air temperature trends (Figure 5). Surface and bottom water temperature trends were positively correlated across the lakes in this dataset, but this correlation was relatively weak (Spearman’s rho = 0.17, p = 0.001; Figure 6a). Averaged across all lakes, the difference in water temperature between surface and bottom layers tended to increase over time. The median rate of change in temperature differential between surface and bottom waters was +0.5 ºC/decade (5–95% range = -1.5 to 4.0 ºC/decade; Figure 6b). Increases in thermal difference between surface and bottom waters were most commonly observed in lakes where summer air temperatures have increased more rapidly than spring air temperatures and CSEM > 0 (Figure 6c). However, increases in thermal difference over time were observed in a majority of lakes regardless of CSEM and seasonal differences in warming rates (Figure 6c). 4. DISCUSSIONThrough our analysis of 382 widespread temperate lakes, we identified that seasonal differences in climate warming may contribute to within-ecosystem spatial mismatches in climate responses. While surface-water temperatures are increasing in conjunction with increased summer air temperature, bottom-water temperatures are more strongly associated with spring air temperatures, which are not changing as rapidly across lakes (Figure 5). Our results help explain why previous studies have found little to no association between summer air temperature and summer bottom-water dynamics (Pilla et al. 2020; Winslow et al. 2017; Zhou et al. 2023), and highlight the important indirect role that climate change can play in driving changes in bottom-water temperature and DO. The magnitude of ecological memory in both surface and bottom waters varied substantially among lakes, complicating efforts to predict future climate-driven changes in water quality. In both surface and bottom waters, polymictic and weakly-stratified systems were comparatively more impacted by concurrent vs. antecedent temperatures, potentially because these systems experience more frequent mixing or entrainment during the summer period (Figures 4, S7). Conversely, antecedent spring air temperature was a more important driver of bottom-water temperature, oxygen demand, and DO in deeper lakes, likely as a result of greater thermal inertia and physical distance from surface-water processes (e.g., Gerten & Adrian 2001; Magee & Wu 2017; Figure 4). For surface water temperature and bottom-water DO, we documented lower cross-seasonal ecological memory in high-latitude lakes, potentially as a result of the greater importance of under-ice dynamics in regulating temperature change and oxygen replenishment in these systems (Vincent et al. 2008). Notably, this cross-lake analysis of which factors modulate the strength of cross-seasonal ecological memory would not have been possible without the compilation and analysis of long-term depth profile data from many lakes worldwide. Although we did not have available data to explore winter conditions, summer in-lake conditions may subsequently influence ecological states throughout the autumn and winter, with small (low surface area) lakes exhibiting higher levels of cross-seasonal ecological memory for DO from the summer to the winter under-ice period (Jansen et al. 2025). Our analysis identified a growing thermal difference between summer surface and bottom water temperatures across lakes worldwide (Figure 6), which supports similar results from previous cross-lake analyses (Kraemer et al. 2015; O’Reilly et al. 2015; Pilla et al. 2020; Richardson et al. 2017). This effect appears to be partially mediated by an interaction between seasonal differences in climate warming rates and ecological memory, as the percentage of lakes that show increasing thermal difference between surface and bottom waters was highest in cases when summer air temperature warmed faster than spring air temperature and CSEM for bottom-water temperature was greater than 0 (Figure 6; Figure S17). However, changes in bottom-water temperature are further regulated by changes in transparency, among other factors (e.g., Bartosiewicz et al. 2019; Rose et al. 2016), which is likely responsible for the fact that a majority of lakes showed increasing thermal differences between surface and bottom waters regardless of ecological memory or the relative difference in spring vs. summer warming rates (Figure 6). Over time, slower rates of bottom-water warming compared to surface-water warming may contribute to strengthened thermal stability (Crossman et al. 2016; Kraemer et al. 2015; Richardson et al. 2017; Figure 6), which could potentially increase the strength of the seasonal memory effect across lakes (e.g., Figure 4). Greater rates of surface vs. bottom warming may alter ecological dynamics across the whole lake, with potential consequences including increased cyanobacterial blooms in warm surface waters, decreased vertical entrainment of nutrients from deep waters, and altered habitat availability (Jane et al. 2024; Rose et al. 2016; Woolway et al. 2022; Pearl and Huisman 2008; Soranno et al. 1997). In a small subset of lakes, we observed the opposite pattern—a decreasing thermal difference between surface and bottom waters. These cases were most common in lakes where bottom-water temperature was more correlated with summer vs. spring air temperature. Decreasing thermal difference could be driven by increases in the frequency and intensity of storm events, which can drive thermal mixing of surface and bottom waters (Klug et al. 2012). Here, lakes with decreasing thermal difference tended to be shallow and weakly stratified, and therefore more susceptible to these storm-driven mixing events (Figure S17). Ecological implications of decreased thermal difference may include loss of cool-water refuge in bottom waters, thereby decreasing habitat for thermally-sensitive species (e.g., Kraemer et al. 2021).Variation in spring air temperature is likely associated with simultaneous changes in ice dynamics, mixing period duration, and stratification onset date, and the relative importance of these factors in shaping summer bottom-water dynamics may vary across lakes (e.g., Dugan 2021; Powers et al. 2022; Toffolon et al. 2020). In particular, the relevant window of spring air temperature is likely to shift earlier over time due to increasingly early onset of thermal stratification (Kraemer et al. 2015; Woolway et al. 2021), which could also result in changing mixing regimes (e.g., polymictic to monomictic). However, stratification onset dates will be further constrained by solar radiation, wind, and ice, among other factors (Flaim et al. 2020). Here, limited spring data availability prevented us from empirically examining these mechanisms. More broadly, it is unlikely that long-term spring data exist across many widespread lakes due to the logistical challenges of sampling during intermittently ice-covered periods. In the absence of spring observations, our analysis of daily modeled ISIMIP water temperature provided a complementary approach for verifying the relationship between stratification onset and cross-seasonal ecological memory and provided support for our empirical analysis. As stratification and ice dynamics continue to change across lakes worldwide, mechanistic characterization of the broad-scale patterns identified in this study will be helpful for predicting future changes in lake ecosystem function.The cross-seasonal ecological memory effect identified in our study likely operates in addition to, and in interaction with, numerous other controls over bottom-water temperature and DO dynamics. Notably, our analysis was focused on temperate lakes, and our conclusions may therefore not apply to tropical or boreal systems that exhibit differing seasonal phenology. Wind patterns, which are changing over time across many lakes, also exert a strong influence over stratification, ice, and mixing dynamics (Flaim et al. 2020; Janatian et al. 2020; Stetler et al. 2021; Woolway et al. 2019). However, substantial uncertainty in locally downscaled wind data across our widespread lakes (e.g., Wu et al. 2024) limited our ability to include wind as a driver of cross-seasonal ecological memory. Accounting for these additional impacts and characterizing cross-seasonal ecological memory across a broader latitudinal gradient would aid in predicting the timing and strength of cross-seasonal ecological memory across lakes. Across ecosystems and variables, ecological memory and legacy effects have gained increasing attention in recent decades to describe the influential role that antecedent conditions can play in driving changes in population, community, and ecosystem dynamics (e.g., Dugan 2021; Hanson et al. 2023; Liu et al. 2019; Ogle et al. 2015; Pilla et al. 2023; Van Meter et al. 2018; Wang et al. 2011). Similar to our findings in lake ecosystems, research across terrestrial ecosystems has found that antecedent effects of winter or spring air temperatures have the potential to exert a stronger role over summer terrestrial vegetation than concurrent summer air temperatures (Kreyling et al. 2019; Wang et al. 2011). Freshwater lakes provide an important example of a case where differences in ecological memory may contribute to a spatial mismatch in the ecological effects of climate change, with divergent summer water quality trends between surface and bottom waters. The mechanisms underlying a cross-seasonal ecological memory effect in temperate lakes are well-supported by decades of research (e.g., Dugan 2021; Oleksy & Richardson 2021; Jansen et al. 2025) and by our empirical analysis across many lakes. Ultimately, our results emphasize the importance of accounting for spatial and temporal heterogeneity in ecosystem responses to climate change.Statement of authorship
Enrichment of phytopathogen dominated by Volutella in the rhizosphere may be an impor...
Long Zhang
Lanfu Liu

Long Zhang

and 10 more

June 01, 2024
Obstacles related to the continuous cropping of sweetpotato ( Ipomoea batatas (L.) Lam.) restrict its intensive production. However, the effects of continuous cropping on soil properties and/or the rhizosphere microbial community are largely unclear. In this study, we analysed changes in rhizosphere soil chemical properties and microbial communities of sweetpotato across different cultivation years. We observed that the microbial diversity and complexity of the fungal ecological network in rhizosphere soils of sweetpotato were decreased after 5 years of continuous cropping, with significant enrichment in Sphingobium, Gemmatimonas, Volutella, and Neoidriella. Tuber yield, soil pH, and available potassium (AK) content were significantly reduced after continuous cropping, with the soil microbial community having the highest correlation with pH, AK, and ammonium nitrogen (NH 4 +-N). Specifically, soil pH and AK were positively correlated with Bacillus and Gaiella, and negatively correlated with some plant-pathogenic fungi ( Volutella and Neoidriella), while NH 4 +-N showed the opposite trend. In addition, soil pH, AK, and the relative abundance of Bacillus were positively correlated with tuber yield, while Volutella showed the opposite trend. In summary, the continuous cropping of sweetpotato negatively affects rhizosphere soil health, resulting in imbalanced soil fertility and increased abundance of pathogens. These results improve our understanding of factors driving obstacles faced with the continuous cropping of sweetpotato, enabling future studies and the development of technologies to overcome these obstacles.
Steric Hindrance Induced Low Exciton Binding Energy Enables Low-Driving-Force Organic...
Tianyu Hu
Xufan Zheng

Tianyu Hu

and 11 more

June 01, 2024
Exciton binding energy ( E b) has been regarded as a critical parameter in charge separation during photovoltaic conversion. Minimizing the E b of the photovoltaic materials can facilitate the exciton dissociation in low-driving force organic solar cells (OSCs) and thus improve the power conversion efficiency (PCE), nevertheless, diminishing the E b with deliberate design principles remains a significant challenge. Herein, bulky side chain as steric hindrance structure was inserted into Y-series acceptors to minimize the E b by modulating the intra- and inter-molecular interaction. Theoretical and experimental results indicate that steric hindrance-induced weaker intra-molecular interactions but stronger inter-molecular interaction can strengthen the molecular polarizability, increase the overlap of electronic orbitals between molecules and facilitate delocalized pathway charge transfer, thereby resulting in a low E b. The conspicuously reduced E b obtained in Y-ChC5 with pinpoint steric hindrance modulation can minimize the detrimental effects on exciton dissociation in low-driving-force OSCs, achieving a remarkable PCE of 19.1% with over 95% internal quantum efficiency. Our study provides a new molecular design rationale to reduce the exciton binding energy.
DRUG İNDUCED ENTEROCOLİTİS SYNDROME WİTH AMOXİCİLLİN/CLAVUNATE AND SAFE ALTERNATİVE B...
Gökhan YÖRÜSÜN
Ahmet SELMANOGLU

Gökhan YÖRÜSÜN

and 3 more

June 01, 2024
DRUG İNDUCED ENTEROCOLİTİS SYNDROME WİTH AMOXİCİLLİN/CLAVUNATE AND SAFE ALTERNATİVE BETA LACTAM ANTİBİOTİC
Calcified Clues: The Impact of Untreated Dural Arteriovenous Fistulas with Chronic Ve...
Sonya Kyi
Lincoln Lim

Sonya Kyi

and 1 more

June 01, 2024
IntroductionIntracranial calcifications are frequently observed in radiological examinations and are generally benign. Subcortical white matter calcifications however warrant further clinical and radiological investigation due to potential associations with infections, metabolic and inherited disorders like Sturge-Weber Syndrome and Fahr disease (1). One rare cause of subcortical calcification would be dural arteriovenous fistula (DAVF), where abnormal connections form between dural venous sinuses, cortical, or leptomeningeal veins, and arterial feeders often from meningeal or scalp arteries (2). DAVFs account for 10-15% of intracranial vascular malformations (3). The etiology of DAVFs remains controversial. Acquired factors like dural venous sinus thrombosis and trauma are linked to adult-onset cases, while congenital factors likely underlie DAVFs presenting in pediatric patients (4). The most common location for DAVF is at the transverse-sigmoid junction, with a slight left-sided predominance (6). Radiologically, DAVFs with chronic venous hypertension or reflux are associated with intracranial hemorrhage or focal areas of cerebral edema (7).As of now, only seven case reports of subcortical white matter calcifications associated with DAVF have been documented. These cases show variability in the distribution of intracranial calcifications, including focal lobar calcifications, unilateral supratentorial brain, bilateral symmetrical supratentorial brain, and basal ganglia calcifications (8-14). In this case study, we present a 57-year- with new symmetric subcortical white matter calcifications within the supratentorial brain and dentate nuclei. These calcifications developed over 2 years on a background of untreated DAVF with chronic venous hypertension. This case study emphasizes the potential morbidity associated with untreated dural arteriovenous fistula (DAVF) over an extended period.
THE IMPORTANCE OF FOLLOW-UP OF ESOPHAGEAL EOSINOPHILIA IN CHILDREN WITH SEVERE COW'S...
Bruna Pultrini Aquilante
Rosely Antunes Patzina

Bruna Pultrini Aquilante

and 7 more

June 01, 2024
THE IMPORTANCE OF FOLLOW-UP OF ESOPHAGEAL EOSINOPHILIA IN CHILDREN WITH SEVERE COW’S MILK ALLERGYTo the Editor:The current understanding of the intricate interplay between food allergy (FA) and eosinophilic esophagitis (EoE) remains incomplete, particularly in patients with severe manifestations of FA or those undergoing oral immunotherapy (OIT). EoE has been recognized as part of the atopic march1, as it shares type 2 inflammation and poses a risk of progression to other atopic diseases, including IgE-mediated food allergy (IgE-FA). However, the incidence of EoE even before food reintroduction2 raises doubts about whether this group represents a subtype of FA and how esophageal changes develop. In clinical practice, there are concerns about underdiagnosing EoE and its potential long-term complications, especially in children whose symptoms are often nonspecific and may be masked by adaptive behaviors3. The proposed longitudinal study aims to characterize esophageal eosinophilia (EE) in children with IgE-mediated cow’s milk allergy (IgE-CMA) and compare clinical and endoscopic findings between patients with and without esophageal symptoms over one year of follow-up.Patients aged 6 to 18 years were recruited from a Brazilian IgE-CMA reference center between 2019-2022. They underwent a standard routine, which included inquiries about esophageal symptoms, laboratory tests, and esophagogastroduodenoscopy (EGD) with biopsy. With the assistance of caregivers, patients verbally reported the frequency and intensity of esophageal symptoms over the last month. Adaptive eating behaviors were assessed using the IMPACT acronym4. Patients who confirmed the persistence of at least one esophageal symptom were classified as symptomatic. Caregivers completed the Pediatric Eosinophilic Esophagitis Symptom Score (PEESS) v2.05during the same visit. The specific IgEs for CM, α-lactalbumin, β-lactoglobulin, casein, egg, soy, wheat, peanut, Brazil nut, codfish, and shrimp were measured using the ImmunoCAP® method. Serum levels of eosinophils and total IgE were also collected.Subsequently, all patients underwent EGD, with at least 4-6 esophageal biopsies (proximal/mid and distal esophagus), along with gastric and duodenal biopsies. Macroscopic characteristics were described using the Endoscopic Reference Score (EREFS)6, completed by the same endoscopist. The histological evaluation included eosinophil count per high-power field (hpf) in each region. Biopsies were evaluated by a single pathologist trained in the EoE Histologic Scoring System (EoEHSS)7 for both proximal/mid and distal regions. The presence of ≥ 15 eos/hpf in the esophageal mucosa was designated as EE. After excluding other causes of EE, symptomatic patients were classified as EoE, while asymptomatic patients were classified as asymptomatic esophageal eosinophilia (aEE). EGD was repeated after at least 8 weeks of treatment for EoE or 1-year follow-up without intervention for aEE. See supplemental data for the detailed methodology.Thirty-three patients with IgE-CMA were assessed. Most were male (57.6%) with a median age of 8.75 years. 84.8% had other atopic conditions, with nearly all reporting prior CM anaphylaxis (87.8%), and 75.7% still reacted to baked milk. The frequency of EE was 45.4%, with 21.2% diagnosed with EoE and 24.2% with aEE. Regarding clinical data, statistically significant differences were not observed between the groups with and without EE (see Table 1). Laboratory tests showed higher results in the EE group but without statistical significance. The percentage of patients sensitized to other food allergens besides CM was similar between the two groups.Comparing patients with EoE and aEE, most of the clinical data did not differ statistically between the groups. A higher median age was found in those with EoE (10.3 vs 8.2 years, p=0.03), along with higher specific IgE values for CM and casein (p=0.02 and p=0.008, respectively). The percentage of patients sensitized to another food allergen was higher in the EoE group (85.7% vs 50%), but this difference did not reach statistical significance. The eosinophil count in the esophagus was statistically similar between the groups, with a predominance of non-diffuse distribution in both. None of the patients exhibited eosinophilia in the stomach or duodenum suggestive of other eosinophilic gastrointestinal diseases8.Table 2 illustrates the comparison of scores between the EoE and aEE groups. EoE patients had significantly higher median PEESS v2.0 total scores (p=0.01), particularly in domains associated with pain and dysphagia (p=0.02). Specifically, four questions were able to distinguish patients with EoE (1, 9, 11, and 12). EREFS scores were similar between the groups, although the frequency of abnormal macroscopy was higher in EoE patients (100% vs 37.5%, p=0.02). EoEHSS also showed no significant differences between the groups. During the follow-up period (see Table 3), most EoE patients achieved clinical and histological remission with omeprazole treatment, including the resolution of fibrosis. Among the 8 patients with aEE, 6 (75%) remained asymptomatic after one year. Of the 6 repeated EGDs, 3 revealed normal histology. The remaining 3 exhibited persistent fibrosis, involving 2 patients who maintained aEE and one who developed EoE.This is the first follow-up study in patients with IgE-CMA that evaluated EE beyond eosinophil counts, utilizing standardized EoE scores in childhood. A high frequency of EE was observed, particularly associated with severe cases of IgE-CMA, highlighting the importance of EoE screening among FA-IgE patients. Given the absence of reliable clinical markers for predicting EE, the challenge persists in identifying symptomatic patients who require EGD. While the use of PEESS contributed to EoE diagnosis in this study, we acknowledge the practical limitations of understanding sporadic complaints or oligosymptomatic patients. To grade PEESS questions or to assess the social impacts of symptoms could provide deeper insights into esophageal involvement. Another noteworthy finding of this study is the possibility of disease activity even before symptom onset, as endoscopic and histological features related to EE were similar between symptomatic and asymptomatic patients. However, since we still lack markers to define active EoE aside from clinical symptoms, debates continue regarding whether aEE should be considered a precursor to EoE or merely a transient phenomenon9.Diagnosing EoE is a relevant concern in IgE-FA patients, especially for those eligible for OIT. In this study, patients with EoE were distinguished from those with aEE by older age and higher levels of CM-specific IgE. However, due to the low incidence of EoE during this follow-up, predicting which aEE patients should be treated over time remains challenging. The phenotype definition could also contribute to understanding this progression. In both EE groups, our results suggest the predominance of a non-fibrostenotic phenotype with favorable outcomes over a period without changes in CM intake: (1) EREFS and EoESS features were mainly inflammatory, regardless of symptom presence, with most showing reversal of fibrosis during follow-up. (2) Histologic remission occurred spontaneously in asymptomatic patients or after omeprazole treatment in the majority of patients with EoE. As this is a small sample of pediatric patients followed for a short period, further follow-up studies will be necessary to confirm whether other IgE-FA groups exhibit a similar disease course.In line with previous research involving FA patients2,10, this study suggests that EoE originates from the sustained activity of inflammatory mediators, regardless of the presence of a food antigen in the esophagus. Especially in atopic individuals, characterized by type 2 immune dysregulation, further investigation is warranted to determine whether eosinophils play a protective or harmful role over time. Consequently, conducting additional research to elucidate the natural progression of EoE, including its underlying mechanisms and factors influencing its course, is essential. This deeper understanding not only promises to facilitate the development of more effective diagnostic and prognostic tools but also to pave the way for timely therapeutic interventions.Word count: 1999Keywords: eosinophilic esophagitis, esophageal eosinophilia, cow’s milk allergy, children, PEESS, EREFS, EoEHSS
Peanut oral immunotherapy plus omalizumab for 24 weeks safely induces tolerance at 48...
Jacqueline Loprete
Jonathan Montemayor

Jacqueline Loprete

and 6 more

June 01, 2024
Background Peanut oral immunotherapy (POIT) with or without omalizumab can improve tolerance in peanut-allergic children. Data regarding adults are limited. We evaluated the safety and efficacy of omalizumab plus POIT over 48 weeks in adults. Methods Adults allergic to ≤300mg peanut protein following double-blind, placebo-controlled peanut challenges (DBPCPCs) received omalizumab 300mg q4 weeks x 6 doses. Daily POIT commenced at Week 12 (25mg), increasing to a maximum 300mg at Week 24, followed by 300mg daily. Participants underwent DBPCPCs up to 1000mg at Weeks 24 and 48. Primary outcome (tolerance of ≥300mg peanut protein) was analysed by intention-to-treat. Changes from baseline and from Week 24 were analysed using paired t-tests. Results Of 25 patients treated (median age 24 years, mean eliciting dose 30mg, mean skin prick [SPT] diameter 10.6mm), all tolerated ≥300mg peanut protein at Week 24, and 22 (88%) at Week 48 (p=0.08; 2 withdrew due to anxiety, 1 lost to follow up), Food Allergy Quality of Life score improved (mean change -29.6 [scale 0-174], p<0.05), and SPT diameter decreased (mean 3.5mm, p<0.0001). Basophil activation by total peanut protein, Ara H2 and Ara H6 decreased significantly at Week 24 (mean -1.2% to -48.0%, all p<0.05) but not at Week 48. Of 169 allergic reactions to POIT, 61 (36.1%) were treated with antihistamine and three (1.8%) with adrenaline. Adverse event (AE) rate for a moderate-severe, POIT-related AE was 0.002/dose [Number needed to harm (NNT H)=500]. Conclusion POIT plus omalizumab for 24 weeks safely induced tolerance of 300mg peanut protein over 48 weeks in peanut-allergic adults.
Preview controller design for constrained discrete-time systems with time-varying
Li Li
Yaofeng Zhang

Li Li

and 2 more

October 20, 2023
In this work, the problem of preview saturated control (PSC) for constrained discrete-time delayed systems (CD-TDS) was investigated. First, using an input–output method, a discrete-time system with time-varying delays was formally eliminated, and a discrete-time system with constant time delay was obtained. Then, an augmented error system (AES) was constructed through an auxiliary signal related to state variables, which changed the problem of PSC transform into a problem of robust stability for the interconnected subsystem. Afterward, using the Lyapunov function and linear matrix inequality (LMI) technique, sufficient conditions for the robust stability of the closed-loop system and the design of the PSC laws were given. Finally, numerical simulations were performed, and they demonstrated the validity of the results presented in this paper.
Discrete repetition effects for visual words compared to faces and animals, but no mo...
Binging SONG
Werner Sommer

Binging SONG

and 2 more

June 01, 2024
Repetition suppression (RS) refers to the reduction of neuronal responses to repeated stimuli as compared to non-repeated stimuli. The predictive coding account of RS proposes that its magnitude is modulated by repetition probability (P(rep)) and that this modulation increases with prior experience with the stimulus category. To test these hypotheses, we examined the RS and it’s modulation by P(rep) for three stimulus categories for which participants had different expertise, using EEG methodology. Cantonese speakers watched paired stimuli (S1-S2) of Asian faces, Chinese written words, and animal pictures with the S2 being the same or different from S1. Attributes of S1 (e.g., the sex of the first face) served as a cue for repetition probability of S2. Time-point by time-point Topographic Analyses of Variance (TANOVA) for words showed significant repetition effects across several intervals (92-140, 150-248, 260-488, and 502-560ms), and expectation effects during 789-844ms. Significant repetition effects were also identified for faces (207-358ms), and animals (324-486ms). Timing and topographies suggest N250r effects for all three stimulus categories, but TANOVA comparisons indicate earlier and distinct topographic distributions of repetition effects for words versus faces (151-263, 277-445m) and animals (148-242, 266-437ms), and for faces versus animals (209-316ms). These results suggest that repetition effects differ between stimulus categories, presumably depending on prior experience and stimulus properties, such as spatial frequencies. Importantly, we did not find any EEG evidence for effects of P(rep) potentially manipulating expectancy. Such null findings of P(rep) effects do not support the general predictive coding account of repetition suppression.
A set of nematode rRNA cistron databases and a primer assessment tool to enable more...
Eléonore Charrier
Rebecca Chen

Eléonore Charrier

and 3 more

June 01, 2024
The ITS-2-rRNA has been particularly useful for nematode metabarcoding. but does not resolve all phylogenetic relationships and reference sequences are not available for many nematode species. This is a particular issue when metabarcoding complex communities such as wildlife parasites or terrestrial and aquatic free-living nematode communities. We have used markerDB to produce four databases of distinct regions of the rRNA cistron; the 18S rRNA gene, the 28S rRNA gene, the ITS-1 intergenic spacer and the region spanning ITS-1_5.8S_ITS-2. These databases comprise 2645, 254, 13461, and 10107 unique full-length sequences representing 1391, 204, 1837, and 1322 nematode species, respectively. The comparative analysis illustrates the complementary value but also reveals a better representation of Clade III, IV, and V than Clade I and Clade II nematodes in each case. Although the ITS-1 database includes the largest number of unique full-length sequences, the 18S rRNA database provides the widest taxonomic coverage. We also developed, PrimerTC; a tool to assess primer sequence conservation across any reference sequence database and have applied it to evaluate a large number of previously published rRNA cistron primers. We identified sets of primers that currently provide the broadest taxonomic coverage for each rRNA marker across the nematode phylum. These new resources will facilitate more comprehensive metabarcoding of nematode communities using either short-read or long-read sequencing platforms. Further, PrimerTC is available as a simple WebApp to guide or assess PCR primer design for any genetic marker and/or taxonomic group beyond the nematode phylum.
Historic disturbance events overruled climatic factors as drivers of ruderal species...
Dymph Wiegmans
Keith Larson

Dymph Wiegmans

and 7 more

June 01, 2024
The contemporary interaction of climate and disturbance drives vegetation composition and species distribution shifts, making their respective roles difficult to disentangle. This study describes the long-term ruderal plant species distributions along the ‘Rallarvägen’ in Abisko, subarctic Sweden. This trail currently serves as a hiking trail but was initially created as a construction road for a railroad from 1898 to 1903 and is paralleled by the E10 Highway since 1982. Using vegetation and climate data from 1903, 1913, 1983, and 2021, we found that warm-adapted ruderal plant species were common along the Rallarvägen shortly after railroad construction in the early 20th century. Interestingly, many of these native and non-native ruderals with relatively high temperature affinity that were present in 1903 and 1913 have since disappeared and have not reappeared, despite the substantial increase in regional temperature in recent decades. In addition, the historical disturbances have had long-lasting effects on the current spatial distribution of the ruderal vegetation. Most ruderals still reside close to the railroad tracks and are progressively filtered out with increasing distance from anthropogenically disturbed introductory points, such as train stations, where they peak in species richness – a process we term “Horizontal Directional Ecological Filtering”, in parallel to the established concept of “Directional Ecological Filtering” along elevational gradients. The historical record of ruderal plant species in the region, influenced by a century-old railroad construction, emphasizes the importance of knowing a system’s disturbance history for understanding current vegetation dynamics and anticipating its future in a changing climate.
Duodenal pyloric adenoma with a long pedicle causes intestinal obstruction: a case re...
Lvcong Zhu
KeLin Yao

Lvcong Zhu

and 3 more

June 01, 2024
A document by Lvcong Zhu. Click on the document to view its contents.
Lacticaseibacillus casei: about a fulminant native valve endocarditis and meningitis...
José Fernando Arias Correal
Andrea García Olarte

José Fernando Arias Correal

and 5 more

June 01, 2024
A document by José Fernando Arias Correal. Click on the document to view its contents.
A novel method for calculating the dynamic reserves of tight gas wells considering st...
Chang-Hao Chen
Jing Luo

Chang-Hao Chen

and 5 more

June 01, 2024
The accuracy of dynamic reserve calculation of gas storage is of great significance for the rational and efficient development of oil and gas fields and the system of gas well allocation. The reservoir in the Shaxi Temple gas field in the ZT block of northwestern Sichuan is tight and highly heterogeneous, with complex gas-water distribution and large differences in gas well test production rates, resulting in rapid decline rates. In order to accurately calculate the dynamic reserves of such tight, water-bearing gas wells, this study takes the water-bearing tight gas reservoirs in the ZT block of northwestern Sichuan as the research object. Experimental methods such as rock X-ray diffraction, constant rate mercury injection, and reservoir rock stress sensitivity were conducted. Based on the experimental results, the porosity and permeability of rock samples under effective stress conditions were corrected using bivariate linear regression. These corrected parameters were then incorporated into the water-gas material balance method to establish a new method for calculating dynamic reserves of water-bearing tight gas reservoirs under stress-sensitive conditions. The results show that: (1) the rock porosity ranges from 6.08% to 10.22%, permeability ranges from 0.035mD to 0.547mD, clay mineral content ranges from 6.58% to 19.14%, pore radius distribution ranges from 90μm to 180μm, throat radius distribution ranges from 0.61μm to 3.41μm, with significant differences in throat distribution, indicating poor reservoir fluid flow capacity and strong tightness; (2) after aging experiments, rock samples exhibit plastic deformation, with porosity and permeability unable to fully recover after pressure relief. The stress sensitivity curve of rock samples shows a two-stage characteristic, with moderate to strong stress sensitivity; (3) porosity stress sensitivity is mainly influenced by pore radius and mineral composition - larger pore radius and higher clay content lead to stronger stress sensitivity, with porosity loss rates ranging from 8.26% to 23.69%. Permeability stress sensitivity is mainly influenced by throat radius and mineral composition - smaller throat radius and higher clay content result in stronger stress sensitivity, with permeability loss rates ranging from 47.91% to 62.03%; (4) a comparative analysis between the traditional dynamic reserve calculation method for gas wells and the new method considering stress sensitivity shows a relative error between 0.90% and 2.41%, with the new method demonstrating better accuracy. This study combines physical experimental results with an effective stress model of reservoir rocks to develop a new method for calculating dynamic reserves of water-bearing tight gas reservoirs under effective stress conditions, providing experimental data and example calculation results to support subsequent dynamic evaluation of gas reservoirs and the establishment of rational well allocation plans.
Reduced fitness associated with introgression within the Western Mediterranean admixe...
maeva Leitwein
Bruno Ernande

maeva Leitwein

and 4 more

June 01, 2024
Unraveling the consequences of hybridization on fitness is of main concern in ecology and evolution. Many studies report how evolutionary mechanisms modulate the mosaic of introgression within genomes but few assessed the associated effect of admixture on fitness traits. Here we took advantage of the Western Mediterranean population of the European seabass (Dicentrarchus labrax), a population resulting from hybridization between the Atlantic and the Mediterranean lineage in the Alboran Sea. By genotyping 1850 admixed fish with the Axiom Sea Bass 57k SNP DlabChip array, we assessed the relationship between individual admixture levels and fitness traits in different thermal regimes (19°C, 21°C, 23°C and 25°C). We first reveal that admixed individuals with more Atlantic ancestry displayed a biased sex ratio toward males, and were more sensitive to temperature variation. Then we show that admixed individuals with more Atlantic ancestry also had a lower body weight (which is correlated to fecundity in fish), compared to fish with less Atlantic ancestry. These results highlight the fact that introgression of Atlantic ancestry is disadvantageous in the Mediterranean basin which is consistent with the previously observed purging of Atlantic ancestry tracts following hybridization.
Recent patents in allergy and immunology: The interleukin-2 receptor pathway agonist...
Jonathan Zalevsky
Christie Fanton

Jonathan Zalevsky

and 1 more

June 01, 2024
A document by Jonathan Zalevsky. Click on the document to view its contents.
IgG4 Related Disease: case report and 6-year follow up of an elusive diagnosis mimick...
Sara Oliveira
Inês Trigo

Sara Oliveira

and 4 more

June 01, 2024
IgG4 Related Disease: case report and 6-year follow up of an elusive diagnosis mimicking malignancySara Melo Oliveira1, Inês Trigo1, Ana Sofia Oliveira1, Isabel Gomes1, Rita Neto Lopes11Family Health Unit of Barrinha, Esmoriz, ACeS Baixo-Vouga, Aveiro, PortugalCorrespondence: Sara Melo Oliveira, Family Health Unit of Barrinha, ACeS Baixo-Vouga, Aveiro, Portugal. Email:sara.portu@gmail.comKey Clinical Message: IgG4-related disease is a rare and emerging pathology, characterized by the appearance of pseudotumors. Due to the ability to mimic other pathologies, it is essential to consider it as a differential diagnosis in multisystemic processes. The diagnosis is challenging, requiring a multidisciplinary approach, to minimize the associated morbidity and mortality.Abstract: IgG4-related disease (IgG4-RD) is a rare, emerging, systemic and chronic pathology,characterized by the appearance of pseudotumors resulting from tissue infiltration by IgG4-positive plasmablasts that promote eosinophilic inflammation of the tissue with subsequent fibrosis. We present the case of a male, 45-year-old patient, who consulted his Family Health Unit with complaints of postprandial discomfort in the left hypochondrium with a feeling of fullness, weight loss, chronic fatigue and hyperhidrosis that had lasted for a month. During physical examination, he was pale, and had pain at palpation of the left hypochondrium. Laboratory data showed increased inflammation markers, abdominal ultrasound and CT demonstrated numerous enlarged lymph nodes in the upper quadrants, raising concern for a malignant lymphoproliferative process. Laparoscopic excisional biopsy revealed features of IgG4-related lymphadenopathy and excluded malignant lymphoproliferative disease. The increase in serum IgG4 supported the final diagnosis of IgG4-RD.Keywords: IgG4-related disease; Pseudotumor; Immune-mediated; Systemic; Chronic.FUNDING INFORMATION: This work did not receive any type of financial support from any entity in the public or private domain.CONFLICT OF INTEREST STATEMENT: The authors have no conflicts of interest to declare.DATA AVAILABILITY STATEMENT: The data that support the findings of this study are available from the corresponding author upon reasonable request.ETHICS STATEMENT: All procedures performed in this case were in accordance with the Helsinki Declaration (as revised in 2013). Written informed consent was obtained from the patient for the publication of this case report and accompanying images. A copy of the written consent is available for review by the editorial office of this journal.CONSENT: Written informed consent was obtained from the patient to publish this report in accordance with the journal’s patient consent policy.PATIENT PERSPECTIVE: The patient was anxious and worried about his health condition, mainly due to the possibility of a neoplastic disease. However, he felt calmer as soon as he was informed about the diagnosis and experienced symptomatic improvement after starting treatment. During the follow-up, he remained cooperative and assiduous in regular consultations.ORCID: Sara Melo Oliveira:https://orcid.org/0000-0003-0649-2694
The Future of Immunology: A Lofoten Perspective
Pawel Borowicz
Carolyn King

Pawel Borowicz

and 5 more

June 01, 2024
One major goal of immunological research is to understand fundamental mechanisms of immune system function and translate these discoveries into innovative approaches for diagnosing, treating, and ideally, preventing disease. Recent years have seen dramatic progress in our appreciation of basic immunologic principles and the pace of taking discoveries to patients is often breath-taking. This is an amazing time for immunologists and the future for the next generation of scientists is bright, indeed. An international meeting held in August 2023 on the Lofoten Islands in Norway provided a forum for discussing promising pathways for future research in our field. This 4th Lofoten workshop was also an opportunity to address another issue, just as important as the future of immunologic research. The recent COVID-19 pandemic highlighted the international phenomenon of a communication gulf between scientists and the public. This manifested itself with both misinformation and deliberate disinformation campaigns around the pandemic, potential treatments for COVID-19, and tragically, the importance of vaccination for individual and community health. The August workshop was an ideal opportunity for scientists from around the world to discuss their experiences in efforts at disseminating non-partisan, trustworthy information that would be useful for their communities. This report summarizes views on future directions in immunologic research presented at round-table discussions at the workshop and subsequent responses to surveys sent to meeting participants. It also summarizes some of the conversation around the responsibility of scientists to communicate with the non-science community and approaches we may use to meet this obligation.
Breaking down silos: The Gastroenterology Immunology Neuroscience (GIN) Discovery Pro...
Juliana Silva
Emma Halmos

Juliana Silva

and 3 more

June 01, 2024
The Gastroenterology Immunology Neuroscience (GIN) Discovery Program represents a new model for research that overcomes the limitations imposed by traditional ‘research silos’ in medical science. By adopting a cross-disciplinary, highly-integrated approach, the GIN Program unites the fields of gastroenterology, immunology, and neuroscience to comprehensively address chronic health challenges. This initiative not only bridges the gaps between basic science, clinical research, and patient care but also emphasises the importance of diversity in ideas, perspectives, and approaches when fostering innovation. The program’s organic, bottom-up growth strategy has facilitated the formation of a vibrant, interdisciplinary community, captivating attention from both national and international institutions. With a vision to create effective therapeutic solutions and pioneer advancements in gut-immune-brain axis research, the GIN Program exemplifies the power of interdisciplinary collaboration. This innovative commitment to change the landscape of medical research aims to inspire similar models that prioritise open communication, mutual respect, and a commitment to groundbreaking science.
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