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Imbalance of Th17 and Tregs in thymoma may be a pathological mechanism of myasthenia...
Yuan Chen
Xue-Song Zhang

Yuan Chen

and 5 more

March 25, 2020
An imbalance in Th17 cells and Tregs may be an important cause of the pathogenesis of thymoma with myasthenia gravis (MG). In this study, 30 patients with simple thymoma and 30 patients with thymoma with MG were analyzed. Flow cytometry analysis of Th17 and Tregs in peripheral blood revealed that the percentages of Th17 in thymoma were lower than those in thymoma with MG, while the percentages of Tregs were higher than those in simple thymoma. Serum cytokine ELISA assays showed that IL-6 levels in simple thymoma were lower than those in MG patients. Further, Th17 and Tregs levels were detected by immunohistochemical double staining of thymoma tissue; the number of positive Th17 cells in thymoma with MG was higher than that in simple thymoma, while positive Tregs showed the opposite results. RORγt protein and mRNA expression in thymoma with MG were both higher than those in simple thymoma. FOXP3 protein and mRNA expression in the thymoma with MG group were lower than those in simple thymoma. The results of coculture of thymoma cells and CD4+ T cells showed that thymoma cells could promote the differentiation of Th17 cells and inhibit the Tregs. Overall, Th17 cells and related transcription factors and cytokines in thymoma with MG patients were higher than those in thymoma patients, whereas, Tregs showed the opposite results, the mechanism may be that thymoma can secrete IL6 and IL21. These findings indicated that imbalances in Th17/Tregs and RORγt/FOXP3 may account for the pathogeny of thymoma with MG.
Clinical and functional consequences of anti-properdin autoantibodies in patients wit...
Maria Radanova
Galya  Mihaylova

Maria Radanova

and 6 more

March 25, 2020
Properdin is the only one positive regulator of the complement system. In this study, we characterize the prevalence, functional consequences and disease associations of autoantibodies against properdin in a cohort of patients with autoimmune disease systemic lupus erythematosus (SLE), suffering from lupus nephritis (LN). We detected autoantibodies against properdin in plasma of 22.5% of the LN patients (16/71) by ELISA. The binding of these autoantibodies to properdin was dose-dependent and was validated by surface plasmon resonance. Higher levels of anti-properdin were related to high levels of anti-dsDNA and ANA and to low concentrations of C3 and C4 in patients and also with histological signs of LN activity and chronicity. The high negative predictive value (NPV) of anti-properdin and anti-dsDNA combination suggested that patients who are both negative for anti-properdin and anti-dsDNA will not have severe nephritis. IgG from anti- properdin positive patients’ plasma increased the C3b deposition on late apoptotic cells by flow cytometry. Nevertheless, these IgGs did not modify substantially the binding of properdin to C3b, the C3 convertase C3bBb and the pro-convertase C3bB, evaluated by surface plasmon resonance. In conclusion, anti- properdin autoantibodies exist in LN patients. They have weak but relevant functional consequences, which could have pathological significance.
Duration of the Second Stage of Labor and associated factors among Mothers Who Gave B...
Gebiyaw Tsegaye

Gebiyaw Tsegaye

March 25, 2020
Abstract Background: the second stage of labor is often the most stressful part of the childbearing process for the woman and fetus, and consequently for the provider. duration of the second stage of labor is influenced by many factors. Methods: prospective cohort study was conducted among mothers who gave birth in selected health facilities of Bahir Dar city from September to December 2017. Data were collected using face to face interviews, document review, and anthropometric measurement techniques. the data were entered into EPI DATA version 3.1 and exported to STATA version 12 for analysis. Both descriptive (frequencies, percentages and median time for second stage labor) and analytic statistics (Cox regression analysis) were performed. The proportional hazard assumption test was done using the Schonefeld residual. Result: The overall median duration of the second stage of labor was found to be 40.9 minutes.Lack of physical activity, the inadequacy of uterine contraction, occipito-posterior fetal position, and birth weight of greater than 4000 grams, and inadequacy of maternal pelvis were predictors of prolonged second stage of labor. Conclusion: Lack of Physical activity, the inadequacy of uterine contraction, occipito-posterior fetal position, and birth weight of greater than 4000 grams, and inadequacy of maternal pelvis were predictors of the prolonged second stage of labor. Keywords: second stage, childbirth, prolonged labor
Survey-based Estimation of Irrigation in India from 1950 to 2014
Chihchung Chou
D Ryu

Chihchung Chou

and 4 more

March 25, 2020
Accurate quantification of irrigation water is necessary in order to examine the realistic effect of agricultural water use on the hydrological cycle and the climate. However, due to a lack of survey-based statistics, the amount of irrigation water is often estimated by irrigation demand derived from hydrologic models without a proper ground validation. This study attempts to construct the first State-level time series of irrigation water volume over India based solely on survey statistics, with the aim of estimating historical irrigation conditions. By assuming that the ratio of irrigated area between States remained constant throughout the period, the annual statistics of the State-level irrigated area were extended from the period of 1990–2014 to the period of 1950–2014. The annual State-level irrigation water volumes were then estimated as a function of the above irrigated area data over 1950¬¬–2014 and calibrated using an independent subset of State-level irrigation water quantity statistics. The irrigation water volume data produced in the current study is compared with a widely used irrigation water demand data. The comparison suggests that the previous data might be significantly overestimated (up to 80 Billion Cubic Metre) over most States with a few States with underestimated values (up to 10 Billion Cubic Metre). The irrigation area and volume data of this study is the first State-level estimate that better represents the historical irrigation condition in India.
Application of metagenomic next-generation sequencing of bronchial needle brushing sp...
Qing  Wang
Bo  Wu

Qing Wang

and 6 more

March 25, 2020
Background: Reports on the application of metagenomic next-generation sequencing (mNGS) to diagnose infectious peripheral pulmonary lesions (PPLs) remain scarce. No research has ever explored which specimen is preferred for mNGS. Methods: We applied mNGS to detect the presence of pathogen in matched transbronchial lung biopsy (TBLB), bronchoalveolar lavage fluid (BALF) and bronchial needle brushing (BB) specimens from 39 patients suspected of having infectious PPLs. We explored the differences in the composition and diagnostic efficacy of the three specimens. Results: We found that mNGS of TBLB, BALF, BB and TBLB + BALF + BB was more sensitive than conventional cultures for bacterial infections, fungal infections and general infections, the difference in sensitivity of mNGS between TBLB, BALF, and BB was not statistically significant. The sensitivity of mNGS of TBLB + BALF + BB for the diagnosis of fungal infections or general infections was higher than mNGS of TBLB and not significantly higher than mNGS of BALF or BB. We found that there was no statistically significant difference in the relative abundance of pathogen amongst the three types of specimens and in relative abundance of all of the six kinds of common oropharyngeal microbiota between TBLB and BB specimens. Conclutions: The study indicated that mNGS of TBLB, BALF or BB could yield a higher sensitivity for pathogen identification. mNGS of the BB samples might be an alternative choice for patients with infectious PPLs but couldn’t tolerate more invasive TBLB procedures.
Facing the SARS-Cov-2 outbreak: What should Obstetrician and Gynecologist need to do?
Hongyuan Zhang
Wei Chen

Hongyuan Zhang

and 4 more

March 25, 2020
Coronavirus Disease 2019 (COVID-19) is an emerging disease with a rapid increase in cases and deaths since its first identification in Wuhan, China, in December 2019. As of March 21, 2020, more than 193,327 confirmed cases of COVID-19 have been reported in 178 countries and states, and Italy is currently the country with the highest number of confirmed casesoutside of China. The WHO declared a public health emergency of international concern (PHEIC) on January 30, 2020, and characterised the COVID-19 situation as a pandemic on March 11, 2020, in response to the human-to-human transmission and rapid growth of the outbreak. The popularity of COVID-19 has obviously entered a new stage and has spread rapidly in countries outside China. As the front-line clinical workers, Obstetricians and Gynaecologists should be vigilant to assess whether pregnant women or female patients are suspected or confirmed of infection, improve their knowledge of prevention and treatment of COVID-19, and take effective precautionary measures.Here, we reviewed the current understanding of COVID-19, combined with the particularity of the patients in gynecology and obstetrics, and share our experience of current clinical practice recommendations and precautions taken at frontline, and discuss how obstetricians and gynaecologists should prepare themselves to deal with the outbreak of this disease.
Design and Simulation of Graphene Based Hybrid Reconfiguration Antenna for Tera-Hertz...
Smrity dwivedi
Shivani Chandra

Smrity dwivedi

and 1 more

March 25, 2020
The present paper has been solving the problem of getting all the three types of reconfigurations in a single antenna without using more than one antenna and that fulfil the requirement of multifunctional system with better performance with the confined volume at higher frequency. At high frequency (THz), the communication system comprise of higher transmission data rate and the low transmitting power with reliable wireless systems. This paper represents the design and analysis of monolayer graphene based reconfigurable array antenna (patches are 1×4 array on polyimide substrate) at terahertz (THz) band for three reconfiguration frequency, radiation pattern and polarization. The results obtained show that the designed antenna resonates at frequency, 0.71 THz with 10.17 dB gain, directivity, 12.69 dB as well as with 60% efficiency, and the reconfiguration in frequency is achieved from frequency ranges, 0.64 THz-0.74 THz, reconfiguration in radiation pattern is achieved 82°-115° and reconfiguration in polarization is achieved as linear, right hand circular polarization and left hand circular polarization using commercial software CST microwave studio.
The effectiveness of convalescent plasma for the treatment of patients with Coronavir...
dong Yue

dong Yue

March 25, 2020
Convalescent plasma may be of clinical benefit for treatment of 2019 Novel Coronavirus. We conducted a systematic review and meta-analysis of these interventions, including Middle East respiratory syndrome-Coronavirus (MERS-CoV) and severe acute respiratory syndrome (SARS-CoV) to summarize reliable evidences of the treatment.Methods:Three major electronic databases (PubMed, Google scholar) were searched,Several studies were collected for Meta-analysis.Results:Seven studies were included in Meta-analysis, including a total number of 416 patients with SARS and 169 patients with MERS infection. Meta-analysis shows that in critically ill patients, the Convalescent plasma can reduced mortality significently. (odds ratio [OR]=0.27;95% confidence interval [CI]=0.15-0.50; I2=0%;P = 0.47).Conclusions:The therapy of Convalescent plasma can reduce mortality of patients with Coronavirus,and it need to be further verified with Large-scale clinical trial.
Clinical decision-making for shoulder surgery referral: an art or a science?
Karen Taylor
George David Baxter

Karen Taylor

and 2 more

March 25, 2020
Decision-making in musculoskeletal health care is complex, with discrepancy among clinical providers, and variation in the per cent of referrals for specialist care. To date there is an increased focus on specialist referrals, risking overuse of expensive testing and contributing to unnecessary treatment. This report will considerer the difficulties of primary care musculoskeletal decision-making using shoulder injuries as an example, presenting a solution based on multi-criteria decision-making analysis with online software. The associated issues involved in clinical decision-making are complex. Contributing to the components of complexity are; the aetiology of shoulders being multi-faceted, the experience and knowledge of providers, and the burden of patient demands. Notwithstanding, funding considerations, resource allocation availability, and other associated issues around clinical decision-making. Considering there are many facets involved in decision-making, this is an area where multi-criteria decision-making analysis (MCDM) may be appropriate. MCDM which uses mathematical analysis, is increasingly being used in health care and could be applied to the challenges of musculoskeletal care. MCDM has the potential to decrease variability in decision-making and be used as a tool to augment clinical decisions. Furthermore, the key clinical factors that decision-making is based on are to date unclear, therefore, this preliminary report offers a start towards moving to a clarification of the key factors, and an approach for implementing improved shoulder clinical care decision-making which could then be adapted and applied to other body sites.
Clinical characteristics of 18-trisomy syndrome failed to be diagnosed after prenatal...
xian wu
qin zhou

xian wu

and 4 more

March 25, 2020
In this multicenter study, we collected a total of 52 babies of 18-trisomy syndrome (34 cases were prenatally diagnosed and 18 failed to be diagnosed), and analyzed their characteristics. In the past 13 years, according to the data from the prenatal diagnosis center in Jiangsu, the estimated detection rate was 65.4% for trisomies 18 in the second trimester. After analyzed the distribution of the groups according to T18-risk, there were two important cut-off value to be noted: 1/455 and 1/5050. It was worthwhile noting that the risk of 65.4% trisomy 18 cases were higher than 1/455, 90.4% higher than 1/5050. However, 96.1% cases in normal control group were lower than 1/5050. No case from normal control group would be higher than the value of risk in 1/450. Meanwhile, the T18-risk of 50% T18 failed to be diagnosed cases were 1/1001~1/5050. If we chosen NIPT follow the standard of 1/5050, we could found 90.4 % T18 cases. It could increased 19.2% T18 babies be detected, but 3.2% normal mother would accepted the NIPT examination which maybe unnecessary. The prediction mode of HCG MoM and AFP MoM might be able to help us reduce the failed to be diagnosedis. It is also necessary to adjust more reasonable range of NIPT with further clinical researches.
Gully expansion and its temporal influence on catchment geomorphic characteristics an...
Shiro Mukai
Paolo Billi

Shiro Mukai

and 4 more

March 25, 2020
To analyse the driving forces of gully network expansion using a present dataset of land use/cover involves limitations because past land use/cover strongly regulates gully formation and evolution. The vegetation cover in the gully catchment at the time of gully incision may best explain the topographical threshold levels. The recent development of photogrammetric techniques enabled to estimate temporal gully volume changes. This study conducted in semi-arid Ethiopian Rift Valley used field measurements and gully volume–length relation to (i) keep track of gully volume changes and (ii) analyse temporal transitions in catchment geomorphology and topographical threshold of gully heads to explain the difference in the gully volumes between two study sub-areas. The topographic thresholds of the gully heads, expressed by the slope (= s) and drainage area (= a), formed (i) in each catchment and (ii) in all the catchments in each sub-area during the same individual period (before 1957, 1957–1972, and 1972–2005) were approximated by power functions (s = ka-b). Transitions in these threshold lines showed clear temporal and spatial patterns: the threshold lines maintained almost the same exponent b specific to each sub-area while the threshold coefficient k decreased as time passed. The expansion of the gully network induced by land use/cover changes lowered the gully topographic threshold level in agroecology, which accelerated further gully expansion and influenced the exponential increase in gully volumes over time. Characteristics of temporal changes in catchment geomorphology partly explained the difference in the area-specific gully volumes between the sub-areas.
DNA degradation in fish: practical solutions and guidelines to improve DNA preservati...
Tom Oosting
Elena Hilario

Tom Oosting

and 3 more

March 25, 2020
1) The more demanding requirements of DNA preservation for genomic research can be difficult to meet when field conditions limit the methodological approaches that can be used, or cause samples to be stored in suboptimal conditions. Such limitations may increase rates of DNA degradation, potentially rendering samples unusable for applications such as genome-wide sequencing. Nonetheless, little is known about the impact of suboptimal sampling conditions. 2) We evaluated the performance of two widely used preservation solutions (1. DESS: 20% DMSO, 0.25M EDTA, NaCl saturated solution, and 2. ethanol) under a range of storage conditions over a three-month period (sampling at 1 day, 1 week, 2 weeks, 1 month, and 3 months) to provide practical guidelines for DNA preservation. DNA degradation was quantified as the reduction in average DNA fragment size over time (DNA fragmentation) because the size distribution of DNA segments plays a key role in generating genomic datasets. Tissues were collected from a marine teleost species, the Australasian snapper, Chrysophrys auratus. 3) We found that the storage solution has a dramatic effect on DNA preservation. In DESS, DNA was only moderately degraded after three months of storage while DNA stored in ethanol showed high levels of DNA degradation already within 24 hours, making samples unsuitable for next-generation-sequencing. 4) We recommend DESS as the most promising solution to improve DNA preservation. These results provide practical and economical advice to improve DNA preservation when sampling for genome-wide applications. Keywords: DMSO, DNA preservation, ethanol, fish, next-generation-sequencing, NGS, snapper
SOIL C AND N STOCKS IN BAUXITE-MINED AREAS UNDER REHABILITATION WITH FOREST SPECIES
Fernanda Valente
Marllon Castro

Fernanda Valente

and 4 more

March 25, 2020
Forest cover can be effective in reducing the changes caused by mining, especially through the recovery of organic matter stocks. The objective was to evaluate the C and N stocks in fractions of soil organic matter in bauxite-mined area under rehabilitation with forest species. The forest covers evaluated were: eucalyptus (Euc), A. peregrina (Ap) and a mixed planting of native forest species (Nat), in addition to an area without forest cover (WCov) and native forest in an unmined area (NV). The fertilization treatments studied were a standard adopted by the company (SF), organic fertilizer (OF), chemical fertilizer (CF) and OF + CF. The total stocks of C and N from particulate organic matter (POM), mineral-associated organic matter (MOM), microbial biomass (MB) and labile C (LC) were estimated, as well as the C/N ratio and the carbon management index (CMI). The influence of the presence or absence of litter was evaluated, as well as the roots on C and N stocks in the soil. The stocks of total and labile C, CMI and MBC did not differ between the forest covers studied in the 0-60 cm layer, being lower than those in NV and higher than those found in WCov. The other variables (TN, CMOM, NMOM, CPOM, NPOM and MBN) were higher only in the NV. Mining causes reduction of organic matter fractions; however, forest cover increase the stocks of TOC, LC and CMI. Roots are more associated with the recovery of C and N stocks than litter and trunk biomass.
On the importance of the novel RIRC technique to highlight the Hidden Intermediate of...
Amal SMAOUI
Khaled ESSALAH

Amal SMAOUI

and 5 more

March 25, 2020
DFT/M062X/6-311+G(2d,2p) theoretical calculations have been applied to the reaction mechanism of the SNAr describing the action of the piperidine C5H10NH on the 2-bromo-3,5-dinitrothiophene. In a first predictive approach, the role of the ligand X in position 5 (X = NO2, CN and H) of the 2-bromo-3-nitrothiophene motif has been studied. Our results show that the dinitro compound represents the best element playing the role of electrophile. In a second part focused on this latter compound, we elucidate the aromatic substitution of bromide by piperidine mechanism. To do this, we first use the traditional tools such as the energy, force and internal coordinate profiles based on the intrinsic reaction coordinate. Then, we strengthen our study by tracing the atomic charge and Wiberg bond indice profiles. All the results demonstrate that we were in the presence of a concerted but asynchronous reaction. This excluded the zwitterion to act as a reaction intermediate. However, by using our new technique, called Reactive Internal Reaction Coordinate (RIRC), which gives access to the reaction path according to the selected active internal coordinates, we were able to locate without ambiguity a singular point associated with the Hidden Reaction Intermediate (HRI), compatible with the zwitterion structure. The latter compound corresponded to a long-lived transient species.
Performance Enhancement of Shunt Active Power Filter Application using Adaptive Neura...
annugovind
Anupama Prakash

Annu Govind

and 2 more

March 24, 2021
Adaptive neural network (ANN) topology-based control is proposed in this paper for three phase three wire shunt active power filter (SAPF) application. The proposed controller improves power quality and compensates harmonic components. The system includes a current controlled voltage source inverter (CC-VSI) using three phase insulated gate bipolar transistors (IGBT), a DSP module for generating regulated pulse width modulated (PWM) pulse and reference DC bus. The increase in nonlinear load applications has raised power quality issues. SAPF has emerged as one of the best solutions to improve power quality. Application of ANN in SAPF eliminates the need for unit template generation and the tuning requirement of phase locked loop (PLL), as required in traditional SAPF. The proposed ANN based SAPF can be dynamically regulated for minimum harmonic contamination. The results were obtained and verified in Matlab/ Simulink platform.
The curious connection between COVID-19 and antioxidants
Annie Kathuria

Annie Kathuria

March 24, 2020
The COVID19 virus has plagued the world, as a cellular and molecular biologist, I am presenting this commentary after careful analysis of the genomic structure of the virus and its effects on the lungs.Why does it affect the older generation more compared to young adults and children?The free radical theory of aging proposes that organisms age because they accumulate oxidative damage1-3. I postulate this causes the older population to have an increase in reactive oxygen species (ROS) 4-7, which partially reduces metabolites of molecular oxygen generated as by-products of various cellular processes, such as respiration1,8. This creates a condition of hypoxia, particularly in the lungs as the lung volume and capacity decreases with age9.Another interesting phenomena to note is that severe acute respiratory syndrome (SARS-CoV) virus, which is genetically similar to corona virus, are known to proliferate in hypoxia conditions. Hence, making the older generation more susceptible to disease.Another point to be noted is the lungs are highly vulnerable to viral infection as the express increased cell surface proteins that the viruses use to gain entry into the cell10. Latest research shows that ACE2 (Angiotensin-converting enzyme 2) has been identified as a potential SARS-CoV2 receptor and is highly expressed in the lungs11-12. One of the severe manifestations of corona virus is lung fibrosis, even when the patient is recovered, the lung function declines by 20-30%13-15. The initiation of lung fibrosis occurs as ROS species are generated by NADPH oxidase-4 (NOX4), the pathway it triggers is angiotensin II (AngII) type 1 receptor (AT1R) axis which causes increased ROS production in lung fibroblasts16. Angiotensin-converting enzyme 2 (ACE2) counteracts this inhibition via the RhoA/Rock pathway by reducing NOX4-derived ROS16. My hypothesis is that as the SARS-CoV2 virus enters the bloodstream, infecting the lung cells, it uses all the available ACE2 receptors, which causes an elevation in AngII-AT1R axis, which leads to activation of NOX4-derived ROS-mediated RhoA/Rock pathway, creating a hypoxic environment, this further facilitates viral multiplication and causes chronic obstructive in the lungs. Therefore, pharmacological antioxidants can act as potential drug targets in this scenario.In layman’s terms- for this virus to multiply, it requires hypoxic conditions and it creates this by attacking the lung surface protein that prevents hypoxia. Potentially, if we have more antioxidants in our body the lesser chance of the virus finding the ideal conditions to proliferate.
Sudden Bradycardia And Impending Cardiac Arrest By Intramyometrial Vasopressin In Lap...
Monika Madaan
Priyanka Bhagotia

Monika Madaan

and 3 more

March 24, 2020
Vasopressin has long been used in myomectomy to decrease blood loss. Its efficacy is beyond doubt. But at the same time it is known to cause some of the serious cardiovascular side effects. We here report a case of severe bradycardia and impending cardiac arrest caused by Intramyometrial infiltration of 13 U of vasopressin and present a review of literature.
Added prognostic value of longitudinal changes of angiogenic factors in early-onset s...
Anna Peguero
Lorena Fernandez-Blanco

Anna Peguero

and 8 more

March 24, 2020
Background: Maternal levels of angiogenic factors are promising prognostic parameters in patients with suspected preeclampsia, but in women with confirmed preeclampsia this performance has been less explored. Objective: To assess in women with early-onset severe preeclampsia whether longitudinal changes in angiogenic factors improve the prediction of adverse outcome. Study design: A cohort was created of consecutive women admitted for early-onset severe preeclampsia with no indication for immediate delivery. Levels of placental growth factor [PlGF], soluble fms-like tyrosine kinase [sFlt-1] and sFlt-1/PlGF ratio were measured at admission and before delivery; and average daily change was calculated. The association of longitudinal changes of angiogenic factors with maternal complications and with the time interval to delivery was evaluated by logistic and Cox regression. Results: Sixty-three women were analyzed, of which 23 (36.5%) had a complication. Longitudinal changes of sFlt-1 were more pronounce in complicated pregnancies (median: 1079.5 vs. 343.7 pg/mL/day; p=0.04). On the multivariate analysis, the baseline model (clinical risk score and sFlt-1 at admission) explained a 6.6% of the uncertainty for complication (R2-Naegelkerke). The addition of sFlt-1 longitudinal changes improved this performance to 23.2% (p=0.004). The median time from admission to delivery was 3 days (95% confidence interval: 1.9-4.05) in those in the highest quartile of sFlt-1 longitudinal changes vs. 10 days (95% confidence interval: 8.1-11.9) in the remaining women (Log-rank test p<0.001). Conclusions: Longitudinal changes in sFlt-1 maternal levels from admission for confirmed early-onset severe preeclampsia add to baseline characteristics in the prediction of maternal complications.
A histone H4 gene prevents premature bolting by attenuating photoperiodic flowering g...
Xiaoyun Xin
Tongbing Su

Xiaoyun Xin

and 8 more

March 24, 2020
Flowering is one of the most important traits in Chinese cabbage because premature flowering reduces yield and quality of the harvested products. Water deficit, caused by drought or other environmental conditions, can induce early flowering. Drought resistance involves global reprogramming of transcription, hormone signaling, and chromatin modification. How these regulatory responses are coordinated via the various pathways is largely unknown. We show that a histone H4 protein, BrHIS4.A04, physically interacts with a homeodomain protein BrVIN3.1 that was selected during the domestication of late-bolting Chinese cabbages. Over-expression of BrHIS4.A04 resulted in drought hypersensitivity and premature flowering under normal conditions but prevented premature bolting under drought conditions. We show that the expression of key ABA signaling genes (ABI1, MYC2, ABA1, and NCED3), and also photoperiodic flowering genes (GI, FT, and SOC1) was attenuated by BrHIS4.A04 under drought conditions. Furthermore, the level of H4-acetylation at these gene loci was hampered in BrHIS4.A04OE plants. BrHIS4.A04 prevents premature bolting by attenuating photoperiodic flowering genes under drought conditions through the ABA signaling pathway. Since BrHIS4.A04OE plants displayed no phenotypes related to vegetative or reproductive development under drought, our findings will contribute to fine-tuning of the flowering time in crops with no growth penalty through genetic engineering.
Continental-scale patterns of extracellular enzyme activity in the subsoil: an overlo...
Nicholas Dove
Keshav Arogyaswamy

Nicholas Dove

and 17 more

March 24, 2020
Stabilization of microbial-derived products such as extracellular enzymes (EE) has gained attention as a possibly important mechanism leading to the persistence of soil organic carbon (SOC). While the controls on EE activities and their stabilization in the surface soil are reasonably well-understood, how these activities change with soil depth and possibly diverge from those at the soil surface due to distinct physical, chemical, and biotic conditions remains unclear. We assessed EE activity to a depth of 1 m (10 cm increments) in 19 soil profiles across the Critical Zone Observatory Network, which represents a wide range of climates, soil orders, and vegetation types. Activities of four carbon (C)-acquiring enzymes (α-glucosidase, β-glucosidase, β-xylosidase, and cellobiohydrolase), two nitrogen (N)-acquiring enzymes (N-acetylglucosaminidase and leucine aminopeptidase), and one phosphorus (P)-acquiring enzyme (acid phosphatase) were measured fluorometrically along with SOC, total N, Olsen P, pH, clay concentration, and phospholipid fatty acids, which we used to characterize the microbial community composition and biomass (MB). For all EEs, activities per gram soil correlated positively with MB and SOC; all of which decreased logarithmically with depth (p < 0.05). Across all sites, over half of the potential soil EE activities per gram soil consistently occurred below 20 cm for all measured EEs. Activities per unit MB or SOC were substantially higher at depth (soils below 20 cm accounted for 80% of whole-profile EE activity), suggesting an accumulation of stabilized (i.e., mineral sorbed) EEs in subsoil horizons. The pronounced enzyme stabilization in subsurface horizons was corroborated by mixed-effects models that showed a significant, positive relationship between clay concentration and MB-normalized EE activities in the subsoil. Furthermore, the negative relationships between soil C, N, and P and C-, N-, and P-acquiring EEs found in the surface soil decoupled at 20 cm, which could have also been caused by EE stabilization. This suggesting that EEs do not reflect soil nutrient availabilities at depth. Taken together, our results suggest that deeper soil horizons hold a significant reservoir of EEs, and that the controls of subsoil EEs differ from their surface soil counterparts.
A Non-deterministic Finite Automata Model for Identification of Ambiguities in USDA T...
PRADEEP H K
Jasma  Balasangameshwara

PRADEEP H K

and 1 more

March 24, 2020
A document by PRADEEP H K. Click on the document to view its contents.
Rimantadine: A potential drug for COVID-19
Richard Njunge

Richard Njunge

March 24, 2020
Background and purpose: Coronavirus disease 2019 (COVID-19) caused by Severe Acute Respiratory Syndrome- Coronavirus 2 (SARS-CoV2) is a highly contagious disease that has infected more than 200,000 patients and led to more than 10000 deaths in 166 countries in less than four months. New medications are needed to combat this disease. Since the process of discovery, development and approval of new drugs is long, old drugs can be repurposed for treatment of COVID-19. Oseltamivir is used for management of COVID-19 and Influenza A. Rimantadine is an alternative drug to oseltamivir for management of influenza A. Therefore, it is possible that rimantadine can be used for management of COVID-19 as an alternative to oseltamivir. The purpose of the study is to verify the potential of rimantadine as a drug for COVID-19 Methods: The SARS-CoV2 nucleocapsid was downloaded from the Protein databank and the chemical structure of rimantadine downloaded from Pubchem. Molecular docking of the nucleocapsid as the receptor and rimantadine as the ligand was done using avogadro and chimera software. Prediction of pharmacokinetic properties was done using SWISSADME website while the toxicity properties predicted using the ProTox server. Results: The interactions between rimantadine and the SARS-CoV2 nucleocapsid involved conventional hydrogen bonding with threonine & asparagine; attractive charge interaction with aspartate and Pi-alkyl interaction with tryptophan. Rimantadine has high gastrointestinal activity, very few drug-drug interactions and is relatively safe. Conclusion: Rimantadine binds to the SARS-CoV2 nucleocapsid and can thus be used for management of COVID-19. Keywords: Rimantadine, COVID-19, SARS-CoV2, Oseltamivir
Effect of supervised group Exercise on psychological WEll-being among pregnant women...
Lotte Broberg
Ann Tabor

Lotte Broberg

and 6 more

March 24, 2020
Objective To assess the effect of supervised group exercise on psychological well-being and symptoms of depression among pregnant women with or at high risk of depression. Design Randomised, controlled trial. Setting Department of Obstetrics, Copenhagen University Hospital, Rigshospitalet, Denmark. Population Pregnant women with a current or previous history of depression or/and anxiety requiring treatment within the last ten years, or use of antidepressants three months prior to or during pregnancy. Methods From August 2016–September 2018 the participants were randomly assigned to 12 weeks supervised group exercise from 17–22 weeks of gestation twice weekly, or to a control group. Main outcome measures The primary outcome was self-reported psychological well-being at 29–34 weeks of gestation, measured by the five-item World Health Organization Well-being Index (WHO-5). Secondary outcomes included delivery outcomes and psychological well-being (WHO-5) eight weeks postpartum. Results The analysis showed no significant effect on psychological well-being on the primary outcome. Mean WHO-5 score in the intervention group was 2.0 (95% CI: –1.3 to 5.2, p=0.2) higher than in the control group. Eight weeks postpartum the intervention group reported higher psychological well-being than the control group, mean difference in WHO-5 of 5.5 (95% CI: 1.0–10.1, p=0.04). Conclusions Supervised group exercise did not improve psychological well-being for women with or at high risk of depression at 29–34 weeks of gestation. Eight weeks postpartum the intervention group reported significant higher psychological well-being than the control group. Funding The Danish foundation TrygFonden and Copenhagen University Hospital, Rigshospitalet. ClinicalTrials.gov (NCT02833519). https://clinicaltrials.gov/ct2/show/NCT02833519?term=EWE&cntry=DK&draw=2&rank=1
Molluscicidal effects of pumpkin seed extracts on Schistosoma vectors   
lynorahmtemeli
wirene46

Floryn Lynorah Mtemeli

and 2 more

March 24, 2020
Floryn Lynorah Mtemeli, Irene Walter*, Ryman ShokoDepartment of Biology, Chinhoyi University of Technology, Zimbabwe*Corresponding author: wirene46@gmail.com AbstractThe aim of the study was to investigate the molluscicidal effects of pumpkin seeds (Curcurbita maxima) on adult, juvenile Biomphalaria, and adult Bulinus snails under laboratory conditions. This study was prompted by recent reports on Schistosoma gaining resistance to the commonly administered drug, praziquantel. Snails were exposed to water and ethanol crude extracts for 24 hours and significant concentration-dependent mortality rates were observed. Observations of the snail mortalities continued up to 72 hours. The lethal concentration of 0.02 mg/ml killed 50% of the snails (LC50) for both the water and ethanol extracts on adult Biomphalaria snails. It was noted that the mortalities were not significantly dependent on the time of the snails’ exposure to the extracts. There was a significant difference between the susceptibility of juvenile and adult snails to the ethanol extract (p = 0.016). These results suggest that pumpkin seeds have a significant molluscicidal effect on Biomphalaria and Bulinus snails. We propose that pumpkin seed extracts be considered as molluscicidal agents in a bid to control transmission of schistosomiasis. Key words: Schistosomiasis, Biomphalaria, Bulinus, molluscicidal activities  Introduction Neglected tropical diseases (NTDs) are a group of 17 major disabling conditions that are among the most common chronic infections in the world's poorest people (World Health Organisation [WHO], 2003). The NTDs afflict an estimated 1.4 billion people, whose greater population live in Africa and are among the poorest in the world, causing significant disability and impairing quality of life (Institute of Medicine, 2011). Of all NTDs, the most neglected are helminthic infections, which comprise five of the top ten NTDs in terms of Disability-Adjusted Life Years (DALYs) (Frean & Mendelson, 2013). Among these helminthic infections is schistosomiasis.Schistosomiasis commonly known as Bilharzias is caused by a digenean trematode of the genus Schistosoma (Katsurada, 1904). The intermediate hosts of all digenetic trematodes are snails and schistosomes are no exemption. In Zimbabwe, the snail vectors are Bulinus globosus for the species S. haematobium and Biomphalaria pfeifferi for S. mansoni (Chimbari, 2012). Despite schistosomiasis being one of the most persistent NTDs, treatment and disease control are based on the utilisation of a single drug, praziquantel (PZQ), otherwise called biltricide. Controlling or preventing morbidity in subjects using praziquantel has not been entirely successful in restricting transmission in high-risk areas as there have been recent reports of PZQ schistosomal resistance (Ismail et al., 1999; Augusto et al., 2017). This raises concerns about future control of the disease and demonstrates the significance of coming up with new tactics to control the disease (Wang, 2012). Optimal disease prevention can be achieved only when parasite infection or re-infection is effectually obstructed (King et al., 2015). As a responsive measure, the WHO published a report of the Strategic and Technical Advisory Group for NTDs. In the light of its call to eliminate the disease by 2025, it discourses schistosomiasis management through the ecological control of the intermediate host population of Schistosoma, snails from the Biomphalaria and Bulinus genus (WHO, 2014; Augusto et al., 2017).It is, therefore, largely agreed that regulation of the snails’ population is an essential part of the control of schistosomiasis (Mohamed et al., 2012). Chemical, biological and physical control strategies have been used on the snails (WHO, 1967; Madsen, 1983; Fagitta & Egami, 1984). Among the chemical compounds, niclosamide is recommended by the WHO as the only chemical molluscicide to be used for snail control despite recent concerns of resistance of Oncomelania snails to the molluscicide (Dai et al., 2014). The WHO, however, recommends further studies on plant molluscicides (Augusto et al., 2017). Molluscicidal plant extracts may offer affordable, locally produced, biodegradable and effectual control means in the rural parts of low-income countries where schistosomiasis is prevalent (Brachenbury, 1998). Extensive investigations may help in understanding their properties and safety as molluscicides. Pumpkins are known not only for the fruit but also for many health benefits and thus have been used for a long time in traditional medicine in many countries such as Turkey and China (Young et al., 2012). Pumpkin seeds have been used in different parts of the world as a traditional medicine for treatments of gastrointestinal parasites as anthelmintic, urinary dysfunctions, hyperplasia of prostate, dysuria, cardiovascular disease, enuresis and lowering blood glucose (Medjakovic et al., 2016). Among the studies that have been done on pumpkin seeds, their anthelmintic potential has proved to be a success on S. mansoni. However, data on their molluscicidal effects on the vectors snails is scarce. A successful trial of pumpkin seeds as a molluscicide would mean a double impact on both the vectors and the cercarial stage of the S. mansoni parasite. The impetus of this investigation was mainly based on the high cost of synthetic molluscicides such as niclosamide in Zimbabwe, their low availability as well as the time taken by the chemical compounds to degrade in the environment. Therefore, assessing the molluscicide potential of methanol and water extracts of natural compounds on the planorbid snails from the Biomphalaria and Bulinus genus would open potential cost-effective noteworthy alternatives in the control of schistosomiasis. Materials and Methods Study site The bioassays of this study were carried out in the biology laboratory and the extraction process of the seeds was done in the chemistry laboratory at Chinhoyi University of Technology, Zimbabwe. Collection of pumpkin seeds and vector snails Pumpkins were bought from a local supermarket in Chinhoyi. They were washed thoroughly and cut to separate the seeds from the fruit. Snails were randomly sampled in October in Murombedzi particularly from Madzorera dam using a sweep net. They were kept in open plastic bottles and covered with moist cotton wool to keep them alive before reaching the laboratory. Preparation of pumpkin seeds ethanolic extracts About 685g of pumpkin seeds were sun-dried for 72 hours to a moisture content of 12.4%. Approximately 600g of the seeds were milled into a fine powder using a mortar and pestle. In order to obtain the ethanolic crude extract, the maceration technique was used. Approximately 900ml of ethanol was added to 300g of refined pumpkin seed powder and left in a dark cupboard for 7 days. At the end of this period, the mixture was filtered on 0.1mm Whatman filter paper grade using an EC vacuum pump (WP6122050) and then concentrated to dryness using Buchi rotary evaporator (R-200) at 78ºC in order to obtain pure crystals of the extract. The crystals obtained were weighed and a total yield of 5g was obtained. The crystals were dissolved in distilled water. The resulting solution of 100mg/ml concentration was considered as the pure extract. Preparation of pumpkin seeds water extracts Approximately 600ml of water was added to 300g of fine pumpkin seed powder and left in a dark cupboard for seven days. The mixture was filtered on 0.1mm Whatman filter paper grade using an EC vapour pump (WP6122050) and the filtrate was concentrated to dryness on the Buchi rotary evaporator and 8g of crystals were obtained. The crystals were dissolved in 80ml distilled water and the solution of 100mg/ml concentration was considered as the pure extract. Snail rearing The snails were reared under laboratory conditions in plastic aquaria of 5L holding capacity measuring 13X12cm. The aquaria were provided with fresh water, from the dams from which the snails were taken, after every two days. No mud, sand, nor any other substratum was put in the aquaria. The laboratory in which they were kept was maintained at a room temperature of 25ºC with natural fluctuations of +/-2ºC for the duration of the research. The snails were fed on oven-dried lettuce leaves ad libitum and kept for five days before being used to allow them to acclimatise to laboratory conditions. Shedding of snails Snails were shed to certify that they were not infected by cercariae, thus ensuring the use of healthy snails only (El-sherbini et al., 2009). After being exposed to the dark for eight hours during the night, snails were placed in 300ml plastic bottles filled with non-chlorinated water and placed in direct sunlight for 8 hours. Thereafter, a drop of water from each of the bottles was transferred to a microscope slide and observed for the presence or absence of cercariae. A snail was considered to be immobile if it was entirely withdrawn into its shell. Snails that were unresponsive to forceful, mechanical stimulation or probing were considered dead. Molluscicidal activity assay During the test process, the snails were kept under normal diurnal lighting and room temperature. They were organised into two classes, established on their developmental stage and shell diameter, juveniles (below 45mm) and adults (above 45mm) (Ciomperlik et al., 2013). Preliminary molluscicidal assay tests were done to determine the minimum effective concentration. A range of six concentrations were assayed - 20%; 40%; 60%; 80% and 100% of the 100mg/ml ethanol and water extract solutions. A lethal effect in a two-hour period among all the concentrations was observed and serial dilutions of the lowest concentration (20%) were used for the molluscicidal assays. A maximum of six serial dilutions of 20% of the pure water and ethanol extracts were made as per WHO guidelines (WHO, 1983). The final concentrations of the water and ethanol extract serial dilutions were 20mg/ml; 2mg/ml; 0.2mg/ml; 0.02mg/ml; 0.002mg/ml and 0.0002mg/ml. A treatment consisted of three snails (three snails per container) of each life stage and thus fifty-three individuals of each group were used per trial. Each group was exposed to the test molluscicide along with three snails of each same life stage as controls. A 0.1 dilution of Thunder was used as positive control and plain dam water as a negative control. A second positive control of absolute ethanol was used to factor into consideration the effects of residual ethanol in the ethanol extracts. The treatments used 10ml of the six dilutions of pumpkin seeds extracts in 90ml medium. The medium used was dam water from which the snails were sampled in 300ml plastic bottles. This was done in order to reduce the number of limiting factors that could affect the snails' metabolism during the trial experiment. Each treatment and the control were carried out in triplicate. The duration of exposure to the molluscicide dilutions and control was three days. After the first 24h, the number of molluscs withdrawn into their shells, immobile and unresponsive to vigorous action was recorded. In order to ensure that the snails were indeed dead, they were placed in distilled water and observed for a two-hour period. Snails were deprived of food during the molluscicidal assays. LC 50 determination and Statistical analysis The minimum concentration required to kill 50% of the snails (LC50) values were determined using Graph pad Prism version 7.0 software (Finney, 1971) with 95% confidence limit. Mortality percentages were expressed and plotted against the log-transformed values of the extract concentrations. The non-linear regression lines obtained from this data were used to determine the LC50 values. One-way analysis of variance (ANOVA) and independent T-tests were used to determine the significant differences between mean mortality values using version IBM SPPS (Statistical Package of Social Sciences) software. Tests for normality were done using Kolmogorov Smirnov tests. Results with p< 0.05 were considered to be statistically significant.  Results
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