AUTHOREA
Log in Sign Up Browse Preprints
LOG IN SIGN UP

Preprints

Explore 66,105 preprints on the Authorea Preprint Repository

A preprint on Authorea can be a complete scientific manuscript submitted to a journal, an essay, a whitepaper, or a blog post. Preprints on Authorea can contain datasets, code, figures, interactive visualizations and computational notebooks.
Read more about preprints.

Comparative analysis of the complete mitochondrial genomes of four cordyceps fungi
can zhong
jian jin

can zhong

and 7 more

November 23, 2021
Cordyceps is a large group of entomogenous, medicinally important fungi. In this study, we sequenced, assembled, and annotated the entire mitochondrial genome of O. xuefengensis, in addition to comparing it against three other complete cordyceps mitogenomes that were previously published. Comparative analysis indicated that the four complete mitogenomes are all composed of circular DNA molecules, although their sizes significantly differ due to high variability in intron and intergenic region sizes in the O. sinensis and O. xuefengensis mitogenomes. All mitogenomes contain 14 conserved genes and two ribosomal RNA genes, but varying numbers of tRNA introns. The Ka/Ks ratios for all 14 PCGs and rps3 were all less than 1, indicating that these genes have been subject to purifying selection. Phylogenetic analysis was conducted using concatenated amino acid and nucleotide sequences of the 14 PCGs and rps3 using two different methods (Maximum Likelihood and Bayesian analysis), revealing highly supported relationships between O. xuefengensis and other Ophiocordyceps species, in addition to a close relationship with O. sinensis. Further, the analyses indicated that cox1 and rps3 play important roles in population differentiation. These mitogenomes will allow further study of the population genetics, taxonomy, and evolutionary biology of medicinally important cordyceps species.
An eco-epidemiological model with general functional response of predator to prey
Lopo de Jesus
César Silva

Lopo de Jesus

and 2 more

November 23, 2021
We consider a nonautonomous eco-epidemiological model with general functions for predation on infected and uninfected preys as well as general functions associated to the vital dynamics of the susceptible prey and predator populations. We obtain persistence and extinction results for the infected prey based on assumptions on auxiliary systems constructed from the disease-free system. We moreover consider an iterative process that can improve the extinction results. We apply our results to general eco-epidemiological models that include several examples existent in the literature.
Depth of almost strictly sign regular matrices (CMMSE 2021)
Pedro Alonso
Jorge Jiménez

Pedro Alonso

and 3 more

November 23, 2021
The concept of depth of an almost strictly sign regular matrix is introduced and used to simplify some algorithmic characterizations of these matrices.
Python app for drawing Bode diagram asymptotes of transfer function for minimum and n...
Magno Enrique Mendoza Meza

Magno Enrique Mendoza Meza

November 23, 2021
The purpose of this article is to introduce an application to draw the asymptotes of Bode diagram module and phase from each constituent elementary factors of any transfer function for minimum and non-minimal phase systems without transport delay. The Bode diagram is the most used tool in the frequency response method. Python was used to program the application to perform the operations as well as the Qt5 Design for the simple graphical interface for the application and all this in the Linux operating system. The application purpose is to assist students in learning the concept and drawing of Bode diagram. For students the non-minimum phase system Bode diagram is more difficult to draw than a minimum phase system due to the presence of zeros and/or poles on right half of s-plane. The phase asymptotes of a quadratic factor was closest to the real phase curve around the corresponding undamped natural frequency and this can be observed in the example showed in this article. This example must be used as a help and not a simply to solve a problem.
AN INNOVATIVE APPROACH IN THE MANAGEMENT OF ALVEOLAR CLEFTS WITH BONE GRAFT HARVEST F...
Symon Guthua
Peter Ng'ang'a

Symon Guthua

and 3 more

November 23, 2021
Alveolar bone grafting is a complex procedure utilized in alveolar cleft repair, however, the ideal site of bone graft material remains highly debated. In this paper, we describe the management of a 14 year old female with bilateral alveolar clefts using alternative intra-oral donor sites for bone graft harvest.
Impant placement on a Focal Cemento-Osseous Dysplasia : A modified protocol with a su...
Mootaz MLOUKA
Mohamed Tlili

Mootaz MLOUKA

and 5 more

November 23, 2021
Cemento-Osseous dysplasia(COD) is a condition where normal bone is replaced by fibrous connective tissue and cementum-like deposits. Implant rehabilitation of a posterior mandibular edentulism in presence of a COD can be a challenging situation due to the lack of vascularization and the high risk of infection of such lesions.
Surgical management of an odontogenic cutaneous sinus tract misdiagnosed for 4 years
Latifa Hammouda
dorsaf touil

Latifa Hammouda

and 4 more

November 23, 2021
A cutaneous sinus tract of dental origin may easily be misdiagnosed and incorrectly treated. This paper reported a case of a 20-years-old male patient referred for a productive cutaneous sinus tract misdiagnosed by medical doctors for more than 4 years. The clinical and radiographic examinations confirmed the odontogenic origin
An investigation into remote sensing techniques and field observations for modeling o...
Smriti Chaulagain
Mark Stone

Smriti Chaulagain

and 5 more

November 23, 2021
Riparian vegetation provides many noteworthy functions in river and floodplain systems including its influence on hydrodynamic processes. Traditional methods for predicting hydrodynamic characteristics in the presence of vegetation involve the application of static roughness ( ns) values, which neglect changes in roughness due to local flow characteristics. The objectives of this study were to: (1) implement numerical routines for simulating dynamic hydraulic roughness ( nd) in a two-dimensional (2D) hydrodynamic model; (2) evaluate the performance of two dynamic roughness approaches; and (3) compare vegetation parameters and hydrodynamic model results based on field-based and remote sensing acquisition methods. A coupled vegetation-hydraulic solver was developed for a 2D hydraulics model using two dynamic approaches, which required vegetation parameters to calculate spatially distributed, dynamic roughness coefficients. Vegetation parameters were determined by field survey and using airborne LiDAR data. Water surface elevations modeled using conventional and the proposed dynamic approaches produced similar profiles. The method demonstrates the suitability in modeling the system where there is no calibration data. Substantial spatial variations in both n and hydraulic parameters were observed when comparing the static and dynamic approaches. Thus, the method proposed here is beneficial for describing the hydraulic conditions for the area having huge variation of vegetation. The proposed methods have the potential to improve our ability to simulate the spatial and temporal heterogeneity of vegetated floodplain surfaces with an approach that is more physically-based and reproducible than conventional “look up” approaches. However, additional research is needed to quantify model performance with respect to spatially distributed flow properties and parameterization of vegetation characteristics.
Adjusting growth standards for fetal sex improves correlation of small babies with st...
Natasha Pritchard
Susan Walker

Natasha Pritchard

and 3 more

November 22, 2021
Objective: Identify the proportion of infants reclassified if sex-specific birthweight charts were used, and if this reclassification has an impact on the correlation between birthweight centile and adverse perinatal outcome. Design: Retrospective cohort study Setting: Victoria, Australia. Population: All infants born from 2005-2015 (529,261) Methods: We applied GROW centiles, either adjusted or unadjusted for fetal sex. We compared proportions of small for gestational age (SGA, <10th centile) infants, then the populations of males considered small only by sex-specific charts and females considered small only by unadjusted charts. Main Outcome Measures: Stillbirth, combined perinatal mortality, NICU admissions, Apgars <7 at 5 minutes, emergency caesarean sections. Results: Of those <10th centile by unadjusted charts, 39.6% were male, and 60.5% female. Using sex-specific charts, 50.3% <10th centile were male and 49.7% female. 9,449 (19.2%) females that were SGA according to unadjusted charts were appropriate for gestational age (AGA,>10th-<90th centile) using sex-specific charts. These reclassified newborn females were not at increased risk of adverse outcomes compared with an AGA infant, but were at increased risk of being iatrogenically delivered for suspected growth restriction (RR 4.90, 95%CI 4.39–5.48). 8,048 male infants were reclassified as SGA by sex-specific charts (25% SGA increase). Compared with AGA infants, these reclassified male newborns were at greater risk of stillbirth (RR 1.94, 95%CI 1.30-2.90) and all other adverse perinatal outcomes. Conclusions: Sex-specific growth standards classify a new high-risk cohort of male infants as SGA, and exclude a cohort of females, whose risk is no greater than appropriately grown infants.
A case report of an extremely rare type of cardiac tumor: Primary Cardiac Angiofibrom...
Aisa Talebi
Sam Zeraatian Davani

Aisa Talebi

and 5 more

December 16, 2021
Cardiac angiofibroma is a very rare diagnosis when a patient develops an intracardiac mass. It is a primary benign cardiac tumor with a scarcity of information in the literature.  This case report illustrates a 26-year-old man with a complaint of chronic chest tightness who was firstly diagnosed with right ventricle tumor by echocardiography then underwent cardiac MRI which confirmed the presence of a highly-vascular tumor with radiologically benign behavior. Then his tumor was excised, his postoperative course was uncomplicated and he was well within almost 2 months after discharge. Ultimately the histopathologic findings demonstrated vascular and stromal tissue in favor of angiofibroma and excluded the other diagnoses with IHC and trichrome staining.  Angiofibroma is a benign, highly vascular tumor, mostly discovered in the nasopharynx. When it is found in the heart, CMR and pathology are pivotal to rule in its diagnosis. It is isointense in T1 weighted and hyperintense in T2 weighted sequences with intense enhancement following contrast injection. Its pathology contains an admixture of vasculatures with CD31 positive immunoreactivity for endothelial cells and fibrotic tissue with bluish coloration in trichrome staining. Eventually, its treatment includes merely surgical excision given its benign nature.
The alternative splicing landscape of a coral reef fish during a marine heatwave
Stanley Kin Nok Chan
Sneha Suresh

Stanley Kin Nok Chan

and 5 more

November 22, 2021
Alternative splicing is a molecular mechanism that enables a single gene to encode multiple transcripts and proteins by post-transcriptional modification of pre-RNA molecules. Changes in the splicing scheme of genes can lead to modifications of the transcriptome and the proteome. This mechanism can enable organisms to respond to environmental fluctuations. In this study, we investigated patterns of alternative splicing in the liver of the coral reef fish Acanthochromis polyacanthus in response to the 2016 marine heatwave on the Great Barrier Reef. The differentially spliced (DS; n=40) genes during the onset of the heatwave (i.e. 29.49°C or +1°C from average) were related to essential cellular functions such as the MAPK signaling system, Ca(2+) binding and homeostasis. With the persistence of the heatwave for a period of one month (February to March), 21 DS genes were detected, suggesting that acute warming during the onset of the heatwave is more influential on alternative splicing than the continued exposure to elevated temperatures. After the heatwave, the water temperature cooled to ~24.96°C, and fish showed differential splicing of genes related to cyto-protection and post-damage recovery (n=26). Two-thirds of the DS genes detected across the heatwave were also differentially expressed, revealing that the two molecular mechanisms act together in A. polyacanthus to cope with the acute thermal change. This study exemplifies how splicing patterns of a coral reef fish can be modified by marine heatwaves. Alternative splicing could therefore be a potential mechanism to adjust cellular physiological states under thermal stress and aid coral reef fishes in their response to more frequent acute thermal fluctuations in upcoming decades.
Mitral degenerative valve leaflets suspected as primary valvular tumor: a case report
Shiqiang Wang
Huai-Dong Chen

Shiqiang Wang

and 3 more

November 22, 2021
Introduction: Echocardiography plays an important role in the diagnosis of heart disease. However, sometimes misdiagnosis information is also provided. Methods and Results: We report a rare case of preoperative echocardiography misdiagnosed as a primary mitral valvular tumor with severe regurgitation. During the surgery procedure, the true lesion was found to be mitral valve leaflet prolapse due to degenerative mitral valve disease. Conclusions: For individual patient, it may need to combine clinical symptoms and wide use of echocardiography and CT or MRI to make the optimal clinical decision.
An unusual complication after augmentation genioplasty: odontogenic infection requiri...
Tania Hassanzadeh
Arnold Lee

Tania Hassanzadeh

and 1 more

November 22, 2021
Augmentation genioplasty is a common surgical procedure with extremely low infection rates. We present the case of a healthy middle-aged woman who experienced years of chronic infection after chin implantation due to a fractured mandibular canine root, which is exceedingly rare. Awareness of this potential complication will reduce patient morbidity.
Optimal Control in Stochastic Model with Short Message Service to HIV/AIDS patients u...
Bongor Danhrée
Yves Emvudu

Bongor Danhrée

and 2 more

November 22, 2021
In this paper, we treat an application of a optimal control problem to the stochastic dynamic system in epidemic. We consider a HIV/AIDS stochastic dynamic model with anti retro viral (ARV)-therapy. This model is formulated and is analyzed previously in [11]. Our objective is to minimize the newly infection cases. ARV-therapy is a curative measure of HIV/AIDS patients. It presents until there the therapeutic effect efficient, even in the cases of resistances. This treatment measure associated to the preventive measures as HIV-Testing and Counseling (HTC), i.e. test technology and education, sensitization campaign on change sexual behavior among people that run the risk, especially, the strategy of quick-alert by Short Message Service (SMS) to patients by the care service, for to ensure that these take their treatment effectively, are again the optimal strategies of the control that permits to reduce the new cases of infection. Thus, we introduce three additional variables in a stochastic dynamic proposed in [11] to act on the proportions of HIV/AIDS patients under ARV by the optimal strategies for the purpose to reduce the prevalence and the incidence. A minimization problem of newly infection cases of HIV/AIDS is formulated and solved analytically and numerically via Bellman’s principle. The numerical results of this controlled dynamics are also described.
Resource limitation determines realized thermal performance and the potential for met...
Anna Vinton
David Vasseur

Anna Vinton

and 1 more

November 22, 2021
1) As temperatures rise across the globe, many species may approach or even surpass their physiological tolerance to withstand high temperatures. Thermal performance curves, which depict how vital rates vary with temperature, are often measured under ideal laboratory conditions and then used to determine the physiological or demographic limits of persistence. However, this approach fails to consider how interactions with other factors (e.g. resources, water availability) may buffer or magnify the effect of temperature change. Recent work has demonstrated that the breadth and shape of a consumer’s thermal performance curve change with resource densities, highlighting the potential for temperature interactions and leading to a potential ‘metabolic meltdown’ when resources decline during warming (Huey and Kingsolver 2019). 2) Here, we further develop the basis for the interaction between temperature and resource density on thermal performance, persistence, and population dynamics by analyzing consumer-resource dynamic models. We find that the coupling of consumer and resource dynamics relaxes the potential for metabolic meltdown because a reduction in top-down control of resources occurs as consumers approach the limits of their thermal niche. However, when both consumers and resources have vital rates that depend on temperature, asymmetry between their responses can generate the necessary conditions for metabolic meltdown. 3) Moreover, we define the concept of a ‘realized’ thermal performance curve that takes into account the dynamic interaction between consumers, resources and temperature, and we describe an important role for this concept moving forward. 4) Synthesis. A better understanding of the link between temperature change, species interactions, and persistence allows us to improve forecasts of community response to climate change. Our work elucidates the importance of thermal asymmetries between interacting species, and resource limitation as a key ingredient underlying realized thermal niches.
Evaluation of Vaccination Strategy Against Rabies in Hong Kong Macaques
Omid Nekouei
Paolo Martelli

Omid Nekouei

and 5 more

November 22, 2021
Rabies is a fatal zoonotic disease that can affect all mammals. Following the directives of the rabies ordinance of the Government of Hong Kong, all wild macaques captured under an ongoing sterilization program (since 2000) were vaccinated against rabies. The main objective of this study was to assess the serological response to rabies vaccination in the population of Hong Kong macaques. An inactivated rabies vaccine was subcutaneously administered to captured macaques under anesthesia. In a 2015 field survey, blood samples from the animals were collected and stored in -80℃ freezer. In July 2021, all frozen sera from vaccinated animals were prepared and tested for antibodies against rabies virus using a commercial enzyme-linked immunosorbent assay (ELISA) test. The test results were dichotomized at the recommended cut-off point of the test kit. Sixty-five samples from the vaccinated macaques were available for this study. All of these animals had received at least one dose of vaccine (1 st vaccination) between 2008 and 2015. The interval between the 1 st vaccination and blood sampling dates ranged from 21 to 2,779 days. Only five of the 65 macaques had a second vaccination record at the time of sampling; all five had high antibody levels. Among the remaining macaques, 77% (46/60) were positive for rabies antibodies. No specific association was observed between the post-vaccination period and the antibody titer of these macaques and no adverse reactions to vaccination were reported. The current vaccination strategy in Hong Kong macaques appears to effectively elicit rabies antibodies in a high proportion of macaque populations in the wild (78-87%). However, reaching the precise level of protection against a potential challenge with the virus should further be investigated.
Hereditary Hemorrhagic Telangiectasia in a Sudanese Patient, A case Report
Fadi Toum Ahmed
 Moh. Mah. Fadelallah Eljack

Fadi Toum Ahmed

and 3 more

November 22, 2021
Hereditary hemorrhagic telangiectasia (HHT) is a rare disorder affecting skin and body’s internal organs with tendency for bleeding. We reports a case of Sudanese 42-year-old with family history of HHT presented with recurrent epistaxis and telangiectasias
Similarity and Consistency Assessment of Three Major Online Drug-Drug Interaction Res...
Elpida Kontsioti
Simon Maskell

Elpida Kontsioti

and 4 more

November 22, 2021
AIM: To explore the level of agreement on drug-drug interaction (DDI) information listed in three major online drug information resources (DIRs) in terms of: (1) interacting drug pairs; (2) severity rating; (3) evidence rating and (4) clinical management recommendations. METHODS: We extracted DDI information from the British National Formulary (BNF), Thesaurus, and Micromedex. Following drug name normalisation, we estimated the overlap of the DIRs. We annotated clinical management recommendations either manually, where possible, or through application of a machine learning algorithm. RESULTS: The DIRs contained 51,481 (BNF), 38,037 (Thesaurus), and 65,446 (Micromedex) drug pairs involved in DDIs. The number of common DDIs across the three DIRs was 6,970 (13.54% of BNF, 18.32% of Thesaurus, and 10.65% of Micromedex). Micromedex and Thesaurus overall showed higher levels of similarity in their severity ratings, while the BNF agreed more with Micromedex on the critical severity ratings and with Thesaurus on the least significant ones. Evidence rating agreement between BNF and Micromedex was generally poor. Variation in clinical management recommendations was also identified, with some categories (i.e. Monitor and Adjust dose) showing higher levels of agreement compared to others (i.e. Use with caution, Wash-out, Modify administration). CONCLUSIONS: There is considerable variation in the DDIs included in the examined DIRs, together with variability in categorisation of severity and clinical advice given. DDIs labelled as critical are more likely to appear in multiple DIRs. Such variability in information could have deleterious consequences for patient safety, and there is a need for harmonisation and standardisation.
A NEW SCALING STRATEGY OF BUBBLING FLUIDIZED BED REACTORS BASED ON POPULATION-BALANCE...
Robert  Macias
Juan Maya

Robert Macias

and 4 more

November 21, 2021
This work proposes a new strategy for the scaling of bubbling fluidized bed reactors. This strategy is based on the bubble size distribution, bubble coalescence phenomenon, and the chemical reactivity, allowing to deduct the dimensionless number Chejne-Macias-Maya that must remain constant at different scales to guarantee the fluidization regime. The proposed strategy is validated from computational simulations carried out at different operating conditions. Additionally, limits for the validity of this scaling strategy were determined, which agrees with those reported in the literature.
Investigation of the Impact of CYP3A5 and CYP2C19 Polymorphisms on Drug-Drug Interact...
Fei Gong
Ying Ouyang

Fei Gong

and 6 more

November 21, 2021
ABSTRACT Aims: This study aimed to develop a PBPK model for tacrolimus incorporating CYP3A5 and CYP2C19 polymorphisms to predict the DDIs between tacrolimus and voriconazole. Methods: Pharmacokinetic (PK) data in rats and healthy subjects receiving tacrolimus with and without voriconazole were used for model development and evaluation. Then, we used the final model to simultaneously investigate the effect of CYP3A5 and CYP2C19 polymorphisms on the PK data of tacrolimus when combined with voriconazole. Results: The final results showed that the predicted Cmax in CYP3A5 nonexpressers was 1.5-fold higher than expressers, and the predicted AUC0-∞ was 1.92 to 1.96-fold higher in nonexpressers. However, the Cmax and AUC0-∞ of tacrolimus both have no significant difference between different CYP2C19 metabolizers. Conclusions: A physiologically-based pharmacokinetic (PBPK) model for tacrolimus integrated with CYP3A5 and CYP2C19 polymorphisms was successfully established, providing more insights regarding the DDIs between tacrolimus and voriconazole in patients with different CYP3A5 and CYP2C19 genotypes. Furthermore, this study highlights the feasibility of PBPK modeling to predict DDIs between these two drugs and the need to include CYP3A5 polymorphisms but not CYP2C19 polymorphisms.
A case of reversible Mobitz type II atrioventricular block after the use of injectabl...
Hisao Naono
Ryuichiro  Takeda

Hisao Naono

and 5 more

November 21, 2021
Although Mobitz type II atrioventricular block is an arrhythmia based on a permanent organic disorder of the His-Purkinje system, reversible factors should be considered. Here, we report the association between a rare reversible Mobitz type II atrioventricular block and antipsychotic medication in a 75-year-old patient with schizophrenia.
Split Accessory Pathway Potentials in a Patient with Antidromic AVRT
Weizhuo Liu
Wentao Gu

Weizhuo Liu

and 4 more

November 21, 2021
A 27-year-old female presenting palpitation without ECG documentation underwent electrophysiology study. EP study revealed atrioventricular accessory pathway with poor and unidirectional pathway conduction, and a fasciculoventricular pathway. During isoproterenol infusion, delta wave promptly became prominent, after which an antidromic AV reentrant tachycardia was induced. When the pathway was mapped, widely split double pathway potentials were observed at 12 o'clock site of tricuspid annulus during mild preexcitation, demonstrating an example of intra-pathway conduction delay, which can be reversed by isoproterenol. Ablation at the site caused accelerated pathway rhythm and eliminated the pathway, rendering the tachycardia non-inducible.
The convexity of compressible subsonic impinging jet flows
XIAOHUI WANG

XIAOHUI WANG

November 21, 2021
We proved the existence and uniqueness of comporessible subsonic impinging jet flow in the work \cite{WX}. As a continuation, in this paper, we investigate the shape of free boundary to the impinging jet flow established in \cite{WX}. More specifically, if the nozzle wall is concave to the fluid, then the free boundary of flow will be convex to the fluid. On another hand, the higher regularity of free boundary at separation point is obtained, provided that the nozzle satisfies corresponding hypotheses.
Using complex network analysis to assess the ecological security network for a rapid...
De Zhou
Zhulu Lin

De Zhou

and 4 more

November 21, 2021
A sound ecological security network (ESN) promotes the interconnection of ecological sources, improves the pattern of ecological security, and alleviates the degradation of an ecosystem. Rapid urbanization and land use changes may lead to serious fragmentation and islanding of landscape patches and further to deep disturbance of regional ESNs. However, most studies in the recent years focused on the methodological development of ESN identification, reconstruction, and optimization, but lacked the systematic assessment of the network after its construction. The purpose of this study is to use complex network analysis to systematically assess the constructed ESN for the urban agglomeration around Hangzhou (UAHB), a rapid urbanization region in China. By integrating landscape ecology theory, graph theory, and complex network analysis, we abstracted the ESN into a topological network and developed an index system to assess the abstracted network, which was based on the structural elements of the topological network (nodes, edges, and the overall network). Our results show that the connectivity and stability of the UAHB’s ESN have been improved in the last 20 years, although isolated nodes are still existing in the ESN. Our study also shows that the network’s robustness under human disturbance has been affected more than that under non-human disturbance. Finally, we proposed five optimization strategies from the perspective of topological structure and ecological function to maintain a sustainable and well-protected ecological system.
← Previous 1 2 … 2009 2010 2011 2012 2013 2014 2015 2016 2017 … 2754 2755 Next →

| Powered by Authorea.com

  • Home