The identification of Daphne species is difficult because of the lack of available morphological characteristics. Here, we aime to describe leaf and wood micromorpho-anatomical characteristics of native Turkish Daphne species (D. glomerata, D. gnidioides, D. mezereum, D. mucronata, D. oleoides subsp. kurdica, D. pontica and D. sericea) from three phytogeographical regions (Europeo-Siberian, Ir.-Turanian and Mediterranean) to contribute to the systematic position of species. Totally, 41 leaf and wood characters were investigated. Most of the features were characterised in detail for the first time in these taxa, and statistical analyses were used to evaluate the diagnostic characters. SEM analysis was carried out to determine the surface structures of leaves and tracheal elements of wood. We encountered the following distinct anatomical differences: (1) the differences in wax depositions in leaves, (2) the pubescens details, (3) the cell wall patterns, (4) the mesophyll types, (5) the structures of midrib, (6) differing stomatal number and stomatal length in hypostomatic leaves with anomocytic stomata and (7) vessels arranged in growth rings, with different ray frequency and cellular ray composition, and the presence of tori in intervessel pits in wood. An identification key based on these micromorpho-anatomical characters is presented, some ecological interpretations are made, and the study’s results are compared to existing data in the literature. Our results demonstrate that the compared micromorpho-anatomical data across taxa are partly congruent with the classification in the Flora of Turkey, but new arrangements may be recommended for the systematic positions of taxa based on their phytogeographical origins.