Globally the climate change is leading to profound shifts in species distributions, particularly in high-altitude ecosystems where cold-adapted fauna face limited options for upslope migration. We investigated the biogeographic responses of the Himalayan Ibex (Capra sibirica), a Near Threatened mountain ungulate and key prey species of the Snow Leopard, to ongoing and projected climate change across the Western Himalaya in India. Using ensemble species distribution models (SDMs) integrating five algorithms (MaxEnt, Random Forest, BRT, GLM, and MARS), we modeled current (2018–2023) and future habitat suitability for the years 2050, 2070, and 2090 under two Shared Socioeconomic Pathway (SSP) scenarios: SSP2-4.5 (intermediate) and SSP5-8.5 (high emissions). We further examined habitat connectivity using least-cost path and circuit theory-based tools, and assessed landscape fragmentation using FRAGSTATS metrics. Our results indicate that under the SSP5-8.5 scenario, the suitable habitat of Himalayan Ibex is projected to decline sharply from 16,127 km² (8% of the landscape) to 5,241 km² (3%) by 2090. Additionally, the number of core habitat patches is expected to fall from 19 to 10, and functional ecological linkages from 25 to 11 under SSP2-4.5, signaling a considerable breakdown in landscape connectivity. Fragmentation metrics reveal increasing patch isolation, declining core area size, and overall loss of landscape cohesion. Alarmingly, 88% of the most suitable habitats lie outside the current protected area network, raising concerns about the efficacy of existing conservation strategies. Our findings demonstrate that the Himalayan Ibex is highly vulnerable to climate-driven habitat shifts and fragmentation. These spatial dynamics pose serious challenges not only to the species’ persistence but also to the broader integrity of alpine ecosystems. We emphasize the need to embed climate-informed biogeographic modeling and connectivity planning into conservation frameworks to secure long-term ecological resilience in the Western Himalayas.