Parkinson's Disease (PD) is a progressive neurodegenerative disorder characterized by motor dysfunction, cognitive decline, and various non-motor symptoms. Early detection and accurate monitoring of the disease remain critical for effective intervention and management. Recent advancements in machine learning (ML) have shown promise in identifying biomarkers that can assist in the diagnosis and progression tracking of Parkinson's Disease. This study explores the role of hierarchical machine learning models in decoding PD biomarkers, aiming to improve predictive accuracy and interpretability. Hierarchical models, which organize data processing in a multi-level structure, allow for better integration of complex, multi-dimensional biomedical data, such as neuroimaging, genetic, and clinical information. By employing techniques like deep learning, decision trees, and ensemble methods, hierarchical models can capture intricate relationships and patterns that traditional ML models often overlook. This research examines how hierarchical approaches enhance the identification of key PD biomarkers, including those associated with motor symptoms, neurodegeneration, and cognitive impairment. Furthermore, the study discusses the potential for these models to offer personalized predictions, paving the way for more tailored treatments. The results demonstrate that hierarchical machine learning models can significantly improve diagnostic accuracy, offering new insights into the molecular and physiological underpinnings of Parkinson's Disease.