Genotyping and Pre-treatment drug resistance surveillance among ART-
naive HIV-1 patients in Tunisia.
Abstract
Drug resistance to Human Immunodeficiency Virus (HIV) is a major factor
in treatment failure. Although this resistance is mostly related to drug
exposure, treatment-naïve patients living with HIV have also been shown
to develop primary drug resistance. Resistance monitoring before
treatment prevents the first-line antiretroviral therapy (ART) failure
and improves treatment outcomes. Very few data are available on the
prevalence of HIV drug-resistance in Tunisia, especially among ART-naïve
patients. This study aimed to investigate HIV-1 drug resistance patterns
among ART-naïve Tunisian and African individuals. The study cohort
included 77 treatment-naïve PLHIV who visited the HIV Center of Monastir
to initiate ART. Viral RNAs were partially sequenced in the RT and PR
regions using Sanger sequencing. Subtypes and Drug Resistance mutations
(DRMs) were determined using the Stanford HIV Database. HIV-1 subtying
revealed the predominance of the CRF02_AG, followed by the subtype B.
12,9% of variants were shown to have at least one Surveillance DRM
(SDRM) in the PR/RT region. Most observed resistance cases (60%) were
noted for RT inhibitors, with K103N the most involved SDRM-inducing
resistance to first and second generation NNRTs (efavirenz, nevirapine,
and rilpivirine). In the PR gene, resistance was found in four samples
on 46 and 85 codons, affecting the sensitivity for Atazanavir and
Lopinavir drugs. This study provides the first baseline information for
pre-treatment drug resistance surveillance of HIV-1 variants in Tunisia,
and shows considerable mutations, which may impede patient management.