References
Ackermann, B., Dünschede, B., Pietzenuk, B., Justesen, B.H., Krämer, U., Hofmann, E., Günther Pomorski, T., and Schünemann, D. (2021). Chloroplast Ribosomes Interact With the Insertase Alb3 in the Thylakoid Membrane. Front. Plant Sci. 12 .Aigner, H., Wilson, R.H., Bracher, A., Calisse, L., Bhat, J.Y., Hartl, F.U., and Hayer-Hartl, M. (2017). Plant RuBisCo assembly in E. coli with five chloroplast chaperones including BSD2. Science (80-. ). 358 : 1272–1278.Allahverdiyeva, Y. et al. (2013). Arabidopsis plants lacking PsbQ and PsbR subunits of the oxygen-evolving complex show altered PSII super-complex organization and short-term adaptive mechanisms. Plant J. 75 : 671–684.Amin, P., Sy, D.A.C., Pilgrim, M.L., Parry, D.H., Nussaume, L., and Hoffman, N.E. (1999). Arabidopsis mutants lacking the 43- and 54-kilodalton subunits of the chloroplast signal recognition particle have distinct phenotypes. Plant Physiol. 121 : 61–70.Anderson, S.A., Satyanarayan, M.B., Wessendorf, R.L., Lu, Y., and Fernandez, D.E. (2021). A homolog of GuidedEntry of Tail-anchored proteins3 functions in membrane-specific protein targeting in chloroplasts of Arabidopsis. Plant Cell33 : 2812–2833.Anghel, S.A., McGilvray, P.T., Hegde, R.S., and Keenan, R.J. (2017). Identification of Oxa1 Homologs Operating in the Eukaryotic Endoplasmic Reticulum. Cell Rep.21 : 3708–3716.Bals, T., Dünschede, B., Funke, S., and Schünemann, D. (2010). Interplay between the cpSRP pathway components, the substrate LHCP and the translocase Alb3: An in vivo and in vitro study. FEBS Lett. 584 : 4138–4144.Barlow, A.N., Manu, M.S., Saladi, S.M., Tarr, P.T., Yadav, Y., Thinn, A.M.M., Zhu, Y., Laganowsky, A.D., Clemons, W.M., and Ramasamy, S. (2023). Structures of Get3d reveal a distinct architecture associated with the emergence of photosynthesis. J. Biol. Chem. 299 : 104752.Bauer, J., Chen, K., Hiltbunner, A., Wehrli, E., Eugster, M., Schnell, D., and Kessler, F. (2000). The major protein import receptor of plastids is essential for chloroplast biogenesis. Nature 403 : 203–207.Bédard, J., Trösch, R., Wu, F., Ling, Q., Flores-Pérez, Ú., Töpel, M., Nawaz, F., and Jarvis, P. (2017). Suppressors of the chloroplast protein import mutant tic40 reveal a genetic link between protein import and thylakoid biogenesis. Plant Cell 29 : 1726–1747.Benz, M., Bals, T., Gügel, I.L., Piotrowski, M., Kuhn, A., Schünemann, D., Soll, J., and Ankele, E. (2009). Alb4 of arabidopsis promotes assembly and stabilization of a non chlorophyll-binding photosynthetic complex, the CF1CF0-ATP synthase. Mol. Plant 2 : 1410–1424.van Berkel, A.A., Santos, T.C., Shaweis, H., van Weering, J.R.T., Toonen, R.F., and Verhage, M. (2020). Loss of MUNC18-1 leads to retrograde transport defects in neurons. J. Neurochem.Van Bezouwen, L.S., Caffarri, S., Kale, R., Kouřil, R., Thunnissen, A.M.W.H., Oostergetel, G.T., and Boekema, E.J. (2017). Subunit and chlorophyll organization of the plant photosystem II supercomplex. Nat. Plants 3 : 1–11.Bodensohn, U.S., Simm, S., Fischer, K., Jäschke, M., Groß, L.E., Kramer, K., Ehmann, C. stian, Rensing, S.A., Ladig, R., and Schleiff, E. (2019). The intracellular distribution of the components of the GET system in vascular plants. Biochim. Biophys. Acta - Mol. Cell Res. 1866 : 1650–1662.Bozkurt, G., Stjepanovic, G., Vilardi, F., Amlacher, S., Wild, K., Bange, G., Favaloro, V., Rippe, K., Hurt, E., Dobberstein, B., and Sinning, I. (2009). Structural insights into tail-anchored protein binding and membrane insertion by Get3. Proc. Natl. Acad. Sci. U. S. A. 106 : 21131–21136.Brettel, K. (1997). Electron transfer and arrangement of the redox cofactors in photosystem I. Biochim. Biophys. Acta - Bioenerg. 1318 : 322–373.Cox, J. and Mann, M. (2008). MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol.26 : 1367–1372.Duncan, O., van der Merwe, M.J., Daley, D.O., and Whelan, J. (2013). The outer mitochondrial membrane in higher plants. Trends Plant Sci. 18 : 207–217.Dünschede, B., Bals, T., Funke, S., and Schünemann, D. (2011). Interaction studies between the chloroplast signal recognition particle subunit cpSRP43 and the full-length translocase Alb3 reveal a membrane-embedded binding region in Alb3 protein. J. Biol. Chem. 286 : 35187–35195.Falk, S., Ravaud, S., Koch, J., and Sinning, I. (2010). The C terminus of the Alb3 membrane insertase recruits cpSRP43 to the thylakoid membrane. J. Biol. Chem. 285 : 5954–5962.Gerdes, L., Bals, T., Klostermann, E., Karl, M., Philippar, K., Hünken, M., Soll, J., and Schünemann, D. (2006). A second thylakoid membrane-localized Alb3/OxaI/YidC homologue is involved in proper chloroplast biogenesis in Arabidopsis thaliana. J. Biol. Chem.281 : 16632–16642.Hackett, J.B., Shi, X., Kobylarz, A.T., Lucas, M.K., Wessendorf, R.L., Hines, K.M., Bentolila, S., Hanson, M.R., and Lu, Y. (2017). An organelle RNA recognition motif protein is required for photosystem II subunit psbF transcript editing. Plant Physiol. 173 : 2278–2293.Hahn, A., Vonck, J., Mills, D.J., Meier, T., and Kühlbrandt, W. (2018). Structure, mechanism, and regulation of the chloroplast ATP synthase. Science360 .High, S., Henry, R., Mould, R.M., Valent, Q., Meacock, S., Cline, K., Gray, J.C., and Luirink, J. (1997). Chloroplast SRP54 interacts with a specific subset of thylakoid precursor proteins. J. Biol. Chem. 272 : 11622–11628.Hoagland, D. and Arnon, D. (1950). The water-culture method for growing plants without soil. Circ. Calif. Agric. Exp. Stn. 347 .Hristou, A., Gerlach, I., Stolle, D.S., Neumann, J., Bischoff, A., Dünschede, B., Nowaczyk, M.M., Zoschke, R., and Schünemann, D. (2019). Ribosome-Associated Chloroplast SRP54 Enables Efficient Cotranslational Membrane Insertion of Key Photosynthetic Proteins. Plant Cell31 : 2734–2750.Jarvis, P. and López-Juez, E. (2013). Biogenesis and homeostasis of chloroplasts and other plastids. Nat. Rev. Mol. Cell Biol. 14 : 787–802.Jiang, X., Jiang, H., Shen, Z., and Wang, X. (2014). Activation of mitochondrial protease OMA1 by Bax and Bak promotes cytochrome c release during apoptosis. Proc. Natl. Acad. Sci. U. S. A. 111 : 14782–14787.Kalbfleisch, T., Cambon, A., and Wattenberg, B.W. (2007). A bioinformatics approach to identifying tail-anchored proteins in the human genome. Traffic 8 : 1687–1694.Kohorn, B.D. and Tobin, E.M. (1989). A hydrophobic, carboxy-proximal region of a light-harvesting chlorophyll a/b protein is necessary for stable integration into thylakoid membranes. Plant Cell 1 : 159–166.León, I.R., Schwämmle, V., Jensen, O.N., and Sprenger, R.R. (2013). Quantitative assessment of in-solution digestion efficiency identifies optimal protocols for unbiased protein analysis. Mol. Cell. Proteomics 12 : 2992–3005.Link, A.J., Skretas, G., Strauch, E.-M., Chari, N.S., and Georgiou, G. (2008). Efficient production of membrane-integrated and detergent-soluble G protein-coupled receptors in Escherichia coli . Protein Sci.17 : 1857–1863.Liu, H., Li, A., Rochaix, J.D., and Liu, Z. (2023). Architecture of chloroplast TOC–TIC translocon supercomplex. Nature 615 : 349–357.LJUNGBERG, U., ÅKERLUND, H. ‐E, and ANDERSSON, B. (1986). Isolation and characterization of the 10‐kDa and 22‐kDa polypeptides of higher plant photosystem 2. Eur. J. Biochem. 158 : 477–482.Ljungberg, U., Åkerlund, H.E., and Andersson, B. (1984). The release of a 10-kDa polypeptide from everted photosystem II thylakoid membranes by alkaline tris. FEBS Lett. 175 : 255–258.Mateja, A., Szlachcic, A., Downing, M.E., Dobosz, M., Mariappan, M., Hegde, R.S., and Keenan, R.J. (2009a). The structural basis of tail-anchored membrane protein recognition by Get3. Nature461 : 361–366.Mateja, A., Szlachcic, A., Downing, M.E., Dobosz, M., Mariappan, M., Hegde, R.S., and Keenan, R.J. (2009b). The structural basis of tail-anchored membrane protein recognition by Get3. Nature 461 : 361–366.Mishra, R.K. and Ghanotakis, D.F. (1993). Selective extraction of 22 kDa and 10 kDa polypeptides from Photosystem II without removal of 23 kDa and 17 kDa extrinsic proteins. Photosynth. Res. 36 : 11–16.Moore, M., Goforth, R.L., Mori, H., and Henry, R. (2003). Functional interaction of chloroplast SRP/FtsY with the ALB3 translocase in thylakoids: Substrate not required. J. Cell Biol. 162 : 1245–1254.Mukhopadhyay, R., Ho, Y.S., Swiatek, P.J., Rosen, B.P., and Bhattacharjee, H. (2006). Targeted disruption of the mouse Asna1 gene results in embryonic lethality. FEBS Lett. 580 : 3889–3894.Murashige, T. and Skoog, F. (1962). A Revised Medium for Rapid Growth and Bio Assays with Tobacco Tissue Cultures. Physiol. Plant. 15 : 473–497.Norris, S.R., Meyer, S.E., and Callis, J. (1993). The intron of Arabidopsis thaliana polyubiquitin genes is conserved in location and is a quantitative determinant of chimeric gene expression. Plant Mol. Biol. 21 : 895–906.Pan, X., Ma, J., Su, X., Cao, P., Chang, W., Liu, Z., Zhang, X., and Li, M. (2018). Structure of the maize photosystem I supercomplex with light-harvesting complexes I and II. Science (80-. ). 360 : 1109–1113.Pasch, J.C., Nickelsen, J., and Schünemann, D. (2005). The yeast split-ubiquitin system to study chloroplast membrane protein interactions. Appl. Microbiol. Biotechnol. 69 : 440–447.Pilgrim, M.L., Van Wijk, K.J., Parry, D.H., Sy, D.A.C., and Hoffman, N.E. (1998). Expression of a dominant negative form of cpSRP54 inhibits chloroplast biogenesis in Arabidopsis. Plant J. 13 : 177–186.Powis, K., Schrul, B., Tienson, H., Gostimskaya, I., Breker, M., High, S., Schuldiner, M., Jakob, U., and Schwappach, B. (2013). Get3 is a holdase chaperone and moves to deposition sites for aggregated proteins when membrane targeting is blocked. J. Cell Sci. 126 : 473–483.Rappsilber, J., Mann, M., and Ishihama, Y. (2007). Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips. Nat. Protoc.2 : 1896–1906.Schindelin, J. et al. (2012). Fiji: an open-source platform for biological-image analysis. Nat. Methods9 : 676–682.Schuenemann, D., Gupta, S., Persello-Cartieauxi, F., Klimyuk, V.I., Jones, J.D.G., Nussaume, L., and Hoffman, N.E. (1998). A novel signal recognition particle targets light-harvesting proteins to the thylakoid membranes. Proc. Natl. Acad. Sci. U. S. A. 95 : 10312–10316.Schuldiner, M., Metz, J., Schmid, V., Denic, V., Rakwalska, M., Schmitt, H.D., Schwappach, B., and Weissman, J.S. (2008). The GET Complex Mediates Insertion of Tail-Anchored Proteins into the ER Membrane. Cell 134 : 634–645.Shi, L.X. and Schröder, W.P. (2004). The low molecular mass subunits of the photosynthetic supracomplex, photosystem II. Biochim. Biophys. Acta - Bioenerg. 1608 : 75–96.Sommer, M., Rudolf, M., Tillmann, B., Tripp, J., Sommer, M.S., and Schleiff, E. (2013). Toc33 and Toc64-III cooperate in precursor protein import into the chloroplasts of Arabidopsis thaliana. Plant, Cell Environ.36 : 970–983.Stolle, D.S. et al. (2024). STIC2 selectively binds ribosome-nascent chain complexes in the cotranslational sorting of Arabidopsis thylakoid proteins. EMBO J.Sundberg, E., Slagter, J.G., Fridborg, I., Cleary, S.P., Robinson, C., and Coupland, G. (1997). ALBINO3, an arabidopsis nuclear gene essential for chloroplast differentiation, encodes a chloroplast protein that shows homology to proteins present in bacterial membranes and yeast mitochondria. Plant Cell 9 : 717–730.Toro, G., Flexas, J., and Escalona, J.M. (2019). Contrasting leaf porometer and infra-red gas analyser methodologies: an old paradigm about the stomatal conductance measurement. Theor. Exp. Plant Physiol.31 : 483–492.Trösch, R., Töpel, M., Flores-Pérez, Ú., and Jarvis, P. (2015). Genetic and physical interaction studies reveal functional similarities between ALBINO3 and ALBINO4 in Arabidopsis. Plant Physiol. 169 : 1292–1306.Tseng, Y.Y., Yu, C.W., and Liao, V.H.C. (2007). Caenorhabditis elegans expresses a functional ArsA. FEBS J. 274 : 2566–2572.Tyanova, S. and Cox, J. (2018). Perseus: A Bioinformatics Platform for Integrative Analysis of Proteomics Data in Cancer Research. Methods Mol. Biol. 1711 : 133–148.Vermeulen, M., Hubner, N.C., and Mann, M. (2008). High confidence determination of specific protein-protein interactions using quantitative mass spectrometry. Curr. Opin. Biotechnol. 19 : 331–337.Voth, W., Schick, M., Gates, S., Li, S., Vilardi, F., Gostimskaya, I., Southworth, D.R., Schwappach, B., and Jakob, U. (2014). The protein targeting factor Get3 functions as ATP-Independent chaperone under oxidative stress conditions. Mol. Cell 56 : 116–127.Wallin, E. and Von Heijne, G. (1998). Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms. Protein Sci. 7 : 1029–1038.Wang, F., Brown, E.C., Mak, G., Zhuang, J., and Denic, V. (2010). A chaperone cascade sorts proteins for posttranslational membrane insertion into the endoplasmic reticulum. Mol. Cell 40 : 159–171.Wang, F., Chan, C., Weir, N.R., and Denic, V. (2014). The Get1/2 transmembrane complex is an endoplasmic-reticulum membrane protein insertase. Nature512 : 441–444.Wei, X., Su, X., Cao, P., Liu, X., Chang, W., Li, M., Zhang, X., and Liu, Z. (2016). Structure of spinach photosystem II-LHCII supercomplex at 3.2 Å resolution. Nature534 : 69–74.Wellburn, A.R. (1994). The spectral determination of chlorophylls a and b, as well as total carotenoids, using various solvents with spectrophotometers of different resolution. J. Plant Physiol. 144 : 307–313.Xing, S., Mehlhorn, D.G., Wallmeroth, N., Asseck, L.Y., Kar, R., Voss, A., Denninger, P., Schmidt, V.A.F., Schwarzländer, M., Stierhof, Y.D., Grossmann, G., and Grefen, C. (2017). Loss of GET pathway orthologs in Arabidopsis thaliana causes root hair growth defects and affects SNARE abundance. Proc. Natl. Acad. Sci. U. S. A. 114 : E1544–E1553.Yu, B., Gruber, M., Khachatourians, G.G., Zhou, R., Epp, D.J., Hegedus, D.D., Parkin, I.A.P., Welsch, R., and Hannoufa, A. (2012). Arabidopsis cpSRP54 regulates carotenoid accumulation in Arabidopsis and Brassica napus. J. Exp. Bot. 63 : 5189–5202.Ziehe, D., Dünschede, B., and Schünemann, D. (2018). Molecular mechanism of SRP-dependent light-harvesting protein transport to the thylakoid membrane in plants. Photosynth. Res. 138 : 303–313.