References
https://www.geneious.com
Aisher, A. (2016). Scarcity, alterity and value: Decline of the
pangolin, the world′s most trafficked mammal. Conservation and
Society 14 , 317-329. doi: 10.4103/0972-4923.197610.Anagnostou,
M. and Doberstein, B. (2022). Illegal wildlife trade and other organised
crime: A scoping review. Ambio 51 , 1615-1631. doi:
10.1007/s13280-021-01675-y.Andrews, K. R., De Barba, M., Russello, M.
A., and Waits, L. P. (2018). Advances in Using Non-invasive, Archival,
and Environmental Samples for Population Genomic Studies. In ’Population
Genomics: Wildlife’. (Eds P. A. Hohenlohe and O. P. Rajora) pp. 63-99.
(Springer International Publishing: Cham.)Arnason, U., Adegoke, J. A.,
Bodin, K., Born, E. W., Esa, Y. B., Gullberg, A., Nilsson, M., Short, R.
V., Xu, X., and Janke, A. (2002). Mammalian mitogenomic relationships
and the root of the eutherian tree. Proceedings of the National
Academy of Sciences 99 , 8151-8156. doi:
10.1073/pnas.10216429.Baral, H. S. and Shah, K. (2008) ’Wild mammals of
Nepal.’ (Himalayan Nature.)De Barba, M., Miquel, C., Lobréaux, S.,
Quenette, P. Y., Swenson, J. E., and Taberlet, P. (2016).
High-throughput microsatellite genotyping in ecology: improved accuracy,
efficiency, standardization and success with low-quantity and degraded
DNA. Molecular Ecology Resources 17 , 492-507. doi:
10.1111/1755-0998.12594.du Toit, Z., du Plessis, M., Dalton, D. L.,
Jansen, R., Paul Grobler, J., and Kotzé, A. (2017). Mitochondrial
genomes of African pangolins and insights into evolutionary patterns and
phylogeny of the family Manidae. BMC Genomics 18 , 746.
doi: 10.1186/s12864-017-4140-5.du Toit, Z., Grobler, J. P., Kotzé, A.,
Jansen, R., Brettschneider, H., and Dalton, D. L. (2014). The complete
mitochondrial genome of Temminck’s ground pangolin (Smutsia
temminckii ; Smuts, 1832) and phylogenetic position of the Pholidota
(Weber, 1904). Gene 551 , 49-54. doi:
10.1016/j.gene.2014.08.040.Gaubert, P. and Antunes, A. (2015). What’s
behind these scales? Comments to “The complete mitochondrial genome of
Temminck’s ground pangolin (Smutsia temminckii ; Smuts, 1832) and
phylogenetic position of the Pholidota (Weber, 1904)”. Gene 563 , 106-108. doi: 10.1016/j.gene.2015.03.021.Gaubert, P.,
Antunes, A., Meng, H., Miao, L., Peigné, S., Justy, F., Njiokou, F.,
Dufour, S., Danquah, E., Alahakoon, J., et al. (2018). The
complete phylogeny of pangolins: Scaling up resources for the molecular
tracing of the most trafficked mammals on earth. Journal of
Heredity 109 , 347-359. doi: 10.1093/jhered/esx097.Gaubert, P.,
Njiokou, F., Ngua, G., Afiademanyo, K., Dufour, S., Malekani, J., Bi, S.
G., Tougard, C., Olayemi, A., Danquah, E., et al. (2016).
Phylogeography of the heavily poached African common pangolin
(Pholidota, Manis tricuspis ) reveals six cryptic lineages as
traceable signatures of Pleistocene diversification. Molecular
Ecology 25 , 5975-5993. doi: 10.1111/mec.13886.Gaubert, P.,
Njiokou, F., Olayemi, A., Pagani, P., Dufour, S., Danquah, E.,
Nutsuakor, M. E. K., Ngua, G., Missoup, A.-D., Tedesco, P. A., et
al. (2015). Bushmeat genetics: setting up a reference framework for the
DNA typing of African forest bushmeat. Molecular Ecology
Resources 15 , 633-651. doi: 10.1111/1755-0998.12334.Geneious
2023.2.1 () Ghimire, P., Raut, N., Khanal, P., Acharya, S., and
Upadhaya, S. (2020). Species in peril: assessing the status of the trade
in pangolins in Nepal. Journal of Threatened Taxa 12 ,
15776-15783.Ghobrial, L., Lankester, F., Kiyang, J. A., Akih, A. E., de
Vries, S., Fotso, R., Gadsby, E. L., Jenkins, P. D., and Gonder, M. K.
(2010). Tracing the origins of rescued chimpanzees reveals widespread
chimpanzee hunting in Cameroon. BMC Ecology 10 , 2. doi:
10.1186/1472-6785-10-2.Gu, T.-T., Wu, H., Yang, F., Gaubert, P.,
Heighton, S. P., Fu, Y., Liu, K., Luo, S.-J., Zhang, H.-R., Hu,
J.-Y., et al. (2023). Genomic analysis reveals a cryptic pangolin
species. Proceedings of the National Academy of Sciences 120 , e2304096120. doi: 10.1073/pnas.2304096120.Hari, R.,
Paterson, I. C., and Choo, S. W. (2016). A new complete mitogenome of
the critically endangered Chinese pangolin Manis pentadactyla .Conservation Genetics Resources 8 , 423-426. doi:
10.1007/s12686-016-0586-z.Hassanin, A., Hugot, J.-P., and van Vuuren, B.
J. (2015). Comparison of mitochondrial genome sequences of pangolins
(Mammalia, Pholidota). Comptes Rendus Biologies 338 ,
260-265. doi: 10.1016/j.crvi.2015.02.003.He, K. and Jiang, X. (2014).
Sky islands of southwest China. I: an overview of phylogeographic
patterns. Chinese Science Bulletin 59 , 585-597. doi:
10.1007/s11434-013-0089-1.Heighton, S. P., Allio, R., Murienne, J.,
Salmona, J., Meng, H., Scornavacca, C., Bastos, A. D. S., Njiokou, F.,
Pietersen, D. W., Tilak, M.-K., et al. (2023). Pangolin genomes
offer key insights and resources for the world’s most trafficked wild
mammals. Molecular Biology and Evolution 40 . doi:
10.1093/molbev/msad190.Hsieh, H.-M., Lee, J. C.-I., Wu, J.-H., Chen,
C.-A., Chen, Y.-J., Wang, G.-B., Chin, S.-C., Wang, L.-C., Linacre, A.,
and Tsai, L.-C. (2011). Establishing the pangolin mitochondrial D-loop
sequences from the confiscated scales. Forensic Science
International: Genetics 5 , 303-307. doi:
10.1016/j.fsigen.2010.06.003.Hu, J.-Y., Hao, Z.-Q., Frantz, L., Wu,
S.-F., Chen, W., Jiang, Y.-F., Wu, H., Kuang, W.-M., Li, H., Zhang,
Y.-P., et al. (2020a). Genomic consequences of population decline
in critically endangered pangolins and their demographic histories.National Science Review 7 , 798-814. doi:
10.1093/nsr/nwaa031.Hu, J.-Y., Roos, C., Lv, X., Kuang, W., and Yu, L.
(2020b). Molecular Genetics Supports a Potential Fifth Asian Pangolin
Species (Mammalia, Pholidota, Manis ). Zoological Science 37 , 538-543, 536.Hua, Y., Wang, J., An, F., Xu, J., Zhang, H.,
and Gu, H. (2020). Phylogenetic relationship of Chinese pangolin
(Manis pentadactyla aurita ) revealed by complete mitochondrial
genome. Mitochondrial DNA Part B 5 , 2523-2524. doi:
10.1080/23802359.2020.1772693.Irwin, D. M., Kocher, T. D., and Wilson,
A. C. (1991). Evolution of the cytochrome b gene of mammals.Journal of Molecular Evolution 32 , 128-144. doi:
10.1007/BF02515385.Jnawali, S., Baral, H., Lee, S., Acharya, K.,
Upadhyay, G., Pandey, M., Shrestha, R., Joshi, D., Lamichhane, B., and
Griffiths, J. (2011). The Status of Nepal’s Mammals: The National Red
List Series-IUCN.Karawita, H., Perera, P., Dayawansa, N., and Dias, S.
(2020). Dietary composition and foraging habitats of the Indian Pangolin
(Manis crassicaudata ) in a tropical lowland forest-associated
landscape in southwest Sri Lanka. Global Ecology and Conservation 21 , e00880. doi: 10.1016/j.gecco.2019.e00880.Katuwal, H. B.,
Neupane, K. R., Adhikari, D., Sharma, M., and Thapa, S. (2015).
Pangolins in eastern Nepal: trade and ethno-medicinal importance.Journal of Threatened Taxa 7 , 7563-7567.Khatiwada, A.
P., Suwal, T. L., Wright, W., Roe, D., Kaspal, P., Thapa, S., and
Paudel, K. (2020). Community conservation in Nepal – opportunities and
challenges for pangolin conservation In ’Pangolins: Science, Society and
Conservation’. (Eds D. W. Challender, H. C. Nash, and C. Waterman).
(Academic Press: London, UK.)Kim, H. J. (2021) Past and Present: What
Museum Specimens and Detection Dogs Bring to Pangolin Conservation.
(University of Washington, Dept of Biology.)Kocher, T. D. and White, T.
J. (1989). Evolutionary Analysis via PCR. In ’PCR Technology: Principles
and Applications for DNA Amplification’. (Ed. H. A. Erlich) pp. 137-147.
(Palgrave Macmillan UK: London.)Leigh, J. W. and Bryant, D. (2015).
POPART: full-feature software for haplotype network construction.Methods in Ecology and Evolution 6 , 1110-1116.Luikart,
G., Zundel, S., Rioux, D., Miquel, C., Keating, K. A., Hogg, J. T.,
Steele, B., Foresman, K., and Taberlet, P. (2008). Low genotyping error
rates and noninvasive sampling in bighorn sheep. The Journal of
Wildlife Management 72 , 299-304.Mahmood, A., Li, J., Wu, S.,
Zhang, F., Xu, N., and Wang, W. (2021). Faecal composition: an
observation of food habits of Chinese pangolin (Manis
pentadactyla ) in a subtropical forest associated countryside in South
China. Chiang Mai Journal of Science 48 , 373-381.Nash,
H. C., Wirdateti, Low, G. W., Choo, S. W., Chong, J. L., Semiadi, G.,
Hari, R., Sulaiman, M. H., Turvey, S. T., Evans, T. A., et al. (2018). Conservation genomics reveals possible illegal trade routes and
admixture across pangolin lineages in Southeast Asia. Conservation
Genetics 19 , 1083-1095. doi: 10.1007/s10592-018-1080-9.Nie,
W., Wang, J., Su, W., Wang, Y., and Yang, F. (2009). Chromosomal
rearrangements underlying karyotype differences between Chinese pangolin
(Manis pentadactyla ) and Malayan pangolin (Manis javanica )
revealed by chromosome painting. Chromosome Research 17 ,
321-329. doi: 10.1007/s10577-009-9027-0.Ogden, R., Dawnay, N., and
McEwing, R. (2009). Wildlife DNA forensics—bridging the gap between
conservation genetics and law enforcement. Endangered Species
Research 9 , 179-195.Pietersen, D. W. and Challender, D. W. S.
(2020). Research needs for pangolins. In ’Pangolins: Science, Society
and Conservation’. (Eds D. W. Challender, H. C. Nash, and C. Waterman).
(Academic Press: London, UK.)Piggott, M. P. (2004). Effect of sample age
and season of collection on the reliability of microsatellite genotyping
of faecal DNA. Wildlife Research 31 , 485-493. doi:
10.1071/WR03096.Piggott, M. P. and Taylor, A. C. (2003). Extensive
evaluation of faecal preservation and DNA extraction methods in
Australian native and introduced species. Australian Journal of
Zoology 51 , 341-355. doi: 10.1071/ZO03012.Priyambada, P.,
Singh, V. K., Singh, A., Joshi, B. D., Dalui, S., Wangmo, L. K., Ghosh,
A., Thapa, A., Singh, S. K., Chandra, K., et al. (2023).
Noninvasive genetic monitoring of Chinese pangolin (Manis
pentadactyla ) from Darjeeling district of Northwest Bengal, India.Wildlife Letters 1 , 15-22. doi:
10.1002/wll2.12005.Schultz, A. J., Cristescu, R. H.,
Littleford-Colquhoun, B. L., Jaccoud, D., and Frère, C. H. (2018). Fresh
is best: Accurate SNP genotyping from koala scats. Ecology and
Evolution 8 , 3139-3151. doi: 10.1002/ece3.3765.Sharma, H. P.,
Rimal, B., Zhang, M., Sharma, S., Poudyal, L. P., Maharjan, S., Kunwar,
R., Kaspal, P., Bhandari, N., Baral, L., et al. (2020). Potential
Distribution of the Critically Endangered Chinese Pangolin (Manis
pentadactyla ) in Different Land Covers of Nepal: Implications for
Conservation. Sustainability 12 , 1282.Shrestha, S.,
Bashyal, A., Dhakal, A., McGreevy, T. J., Buffum, B., Joshi, J.,
Chaudhary, H. K., and Khanal, S. N. (2020). Mitochondrial DNA analysis
of critically endangered Chinese Pangolins (Manis pentadactyla )
from Nepal. Mitochondrial DNA Part B 5 , 3257-3261. doi:
10.1080/23802359.2020.1811174.Su, B., Liu, R.-Q., Wang, Y.-x., and Shi,
L.-m. (1994). Genetic diversity in the Chinese pangolin (Manis
pentadactyla ) inferred from protein electrophoresis. Biochemical
Genetics 32 , 343-349. doi: 10.1007/BF02426896.Sun, N. C.-M.,
Huang, C.-C., Tseng, Y.-W., Suwal, T. L., Chi, M.-J., Jang-Liaw, N.-H.,
and Hung, K.-H. (2021). Complete mitochondrial genome of Manis
pentadactyla pentadactyla (Mammalia: Pholidota), an endemic subspecies
of Chinese pangolin: mitogenome characterisation and phylogenetic
implications. Biodiversity Data Journal 9 .Thapa, P.,
Khatiwada, A. P., Nepali, S. C., and Paudel, S. (2014). Distribution and
conservation status of Chinese pangolin (Manis pentadactyla ) in
Nangkholyang VDC, Taplejung, Eastern Nepal. American Journal of
Zoological Research 2 , 16-21.Wasser, S. K., Mailand, C.,
Booth, R., Mutayoba, B., Kisamo, E., Clark, B., and Stephens, M. (2007).
Using DNA to track the origin of the largest ivory seizure since the
1989 trade ban. Proceedings of the National Academy of Sciences 104 , 4228-4233. doi: 10.1073/pnas.0609714104.Wasser, S. K.,
Shedlock, A. M., Comstock, K., Ostrander, E. A., Mutayoba, B., and
Stephens, M. (2004). Assigning African elephant DNA to geographic region
of origin: Applications to the ivory trade. Proceedings of the
National Academy of Sciences 101 , 14847-14852. doi:
10.1073/pnas.0403170101.Wasser, S. K., Torkelson, A., Winters, M.,
Horeaux, Y., Tucker, S., Otiende, M. Y., Sitam, F. A. T., Buckleton, J.,
and Weir, B. S. (2018). Combating transnational organized crime by
linking multiple large ivory seizures to the same dealer. Science
Advances 4 , eaat0625. doi: 10.1126/sciadv.aat0625.Wasser, S.
K., Wolock, C. J., Kuhner, M. K., Brown, J. E., Morris, C., Horwitz, R.
J., Wong, A., Fernandez, C. J., Otiende, M. Y., Hoareau, Y., et
al. (2022). Elephant genotypes reveal the size and connectivity of
transnational ivory traffickers. Nature Human Behaviour 6 , 371-382. doi: 10.1038/s41562-021-01267-6.Wedrowicz, F.,
Karsa, M., Mosse, J., and Hogan, F. E. (2013). Reliable genotyping of
the koala (Phascolarctos cinereus ) using DNA isolated from a
single faecal pellet. Molecular Ecology Resources 13 ,
634-641. doi: 10.1111/1755-0998.12101.Wedrowicz, F., Mosse, J., Wright,
W., and Hogan, F. E. (2019). Isolating DNA sourced non-invasively from
koala scats: a comparison of four commercial DNA stool kits.Conservation Genetics Resources 11 , 219-229. doi:
10.1007/s12686-018-0994-3.Willcox, D., Nash, H. C., Trageser, S., Kim,
H. J., Hywood, L., Connelly, E., Ichu Ichu, G., Kambale Nyumu, J.,
Mousset Moumbolou, C. L., Ingram, D. J., et al. (2019).
Evaluating methods for detecting and monitoring pangolin (Pholidata:
Manidae) populations. Global Ecology and Conservation 17 , e00539. doi: 10.1016/j.gecco.2019.e00539.Wu, S.-H., Chen,
M., Chin, S.-C., Lee, D.-J., Wen, P.-Y., Chen, L.-W., Wang, B.-T., and
Yu, H.-T. (2007). Cytogenetic analysis of the Formosan pangolin,Manis pentadactyla pentadactyla (Mammalia: Pholidota).Zoological Studies 46 , 389-396.Xie, X., Ye, H., Cai, X.,
Li, C., Li, F., Tian, E., and Chao, Z. (2021). DNA mini-barcodes, a
potential weapon for conservation and combating illegal trade of
pangolin. Tropical Conservation Science 14 ,
19400829211017361. doi: 10.1177/19400829211017361.Zhang, Y.-P. and Shi,
L.-M. (1991). Genetic diversity in the Chinese pangolin (Manis
pentadactyla ): Inferred from restriction enzyme analysis of
mitochondrial DNAs. Biochemical Genetics 29 , 501-508.