Gene set |
Gene set |
Number |
Average gene length (bp) |
Average CDS
length (bp) |
Average exon num per gene |
Average exon length (bp) |
Average intron length (bp) |
De novo |
AUGUSTUS |
28,361 |
18,524.94 |
1458.67 |
8.34 |
174.81 |
2323.75 |
|
Genscan |
32,602 |
23,337.65 |
1527.94 |
8.71 |
175.41 |
2828.54 |
Homolog |
O.niloticus |
46,273 |
11,823.46 |
1,146.72 |
5.76 |
199.11 |
2243.32 |
|
E.lanceolatus |
43,428 |
12,386.84 |
1,166.35 |
6.13 |
190.25 |
2186.91 |
|
L.calcarifer |
43,682 |
12,522.15 |
1,163.49 |
6.11 |
190.38 |
2222.24 |
|
G.acuticeps |
42,462 |
11,486.95 |
1,128.77 |
5.79 |
195.11 |
2164.65 |
|
C.lumpus |
42,018 |
12,148.39 |
1,142.28 |
6.02 |
189.61 |
2,190.58 |
|
E.akaara |
41,589 |
13,846.16 |
1,206.10 |
6.57 |
183.47 |
2,267.74 |
|
P.georgianus |
42,051 |
12,681.74 |
1,182.00 |
5.98 |
197.59 |
2,308.20 |
|
P.leopardus |
53,773 |
10170.53 |
904.85 |
4.78 |
189.16 |
2,449.01 |
trans.orf/ISOseq |
trans.orf/ISOseq |
36,352 |
20,686.78 |
1,196.28 |
9.54 |
274.54 |
2,116.70 |
MAKER |
MAKER |
26,130 |
20,599.55 |
1,585.97 |
9.58 |
243.21 |
2,129.63 |