Gene set Gene set Number Average gene length (bp) Average CDS length (bp) Average exon num per gene Average exon length (bp) Average intron length (bp)
De novo AUGUSTUS 28,361 18,524.94 1458.67 8.34 174.81 2323.75
Genscan 32,602 23,337.65 1527.94 8.71 175.41 2828.54
Homolog O.niloticus 46,273 11,823.46 1,146.72 5.76 199.11 2243.32
E.lanceolatus 43,428 12,386.84 1,166.35 6.13 190.25 2186.91
L.calcarifer 43,682 12,522.15 1,163.49 6.11 190.38 2222.24
G.acuticeps 42,462 11,486.95 1,128.77 5.79 195.11 2164.65
C.lumpus 42,018 12,148.39 1,142.28 6.02 189.61 2,190.58
E.akaara 41,589 13,846.16 1,206.10 6.57 183.47 2,267.74
P.georgianus 42,051 12,681.74 1,182.00 5.98 197.59 2,308.20
P.leopardus 53,773 10170.53 904.85 4.78 189.16 2,449.01
trans.orf/ISOseq trans.orf/ISOseq 36,352 20,686.78 1,196.28 9.54 274.54 2,116.70
MAKER MAKER 26,130 20,599.55 1,585.97 9.58 243.21 2,129.63