Pathogenetic Diversity of Cytomegalovirus Genotypes: Implications for Ocular DiseaseDavid Navarro1,2,31Microbiology Service, Clinic University Hospital, INCLIVA Health Research Institute, Valencia, Spain.2CIBER de Enfermedades Infecciosas, Instituto de Salud Carlos III, Madrid, Spain.3Department of Medicine, School of Medicine, University of Valencia, Valencia, Spain.*Correspondence:David Navarro, Microbiology Service, Hospital Clínico Universitario, Instituto de Investigación INCLIVA, Av. Blasco Ibáñez 17, 46010 Valencia, Spain. Phone: 34(96)1973500; Fax: 34(96)3864173; Email: david.navarro@uv.es.Cytomegalovirus (CMV) is a prototypical β-herpesvirus that establishes persistent infection in the human host and typically causes severe clinical conditions (end-organ disease) in immunocompromised individuals, particularly transplant recipients, in whom it is associated with high morbidity and mortality.¹ While CMV usually causes asymptomatic or mild infection in immunocompetent individuals, several recently published studies suggest that CMV may be responsible for an increasing number of anterior segment ocular infections in this population, including anterior uveitis and corneal endotheliitis.2-5 These conditions may lead to severe complications such as corneal decompensation and glaucomatous optic neuropathy, both of which can result in vision loss. Intriguingly, most cases of CMV-associated anterior uveitis have been reported in East Asian populations. Despite being a DNA virus, CMV exhibits substantial genetic diversity. Although sequenced CMV strains are approximately 95% homologous at both the DNA and protein levels, polymorphic sequences are distributed across both coding and non-coding regions of the viral genome. Notably, the greatest variability is found in genes encoding viral glycoproteins, including gB, gH, gN, gO, and gL, all of which are highly immunogenic and play a critical role in viral entry.6 Glycoprotein B (gB), encoded by ORF UL55, plays a critical role in viral entry by mediating fusion between the viral and cellular membranes, as well as cell-to-cell viral transmission.⁷ To date, five major gB genotypes -gB1, gB2, gB3, gB4, and gB5- have been identified based on nucleotide polymorphisms surrounding the furin cleavage site (codons 448-481), a key domain involved in the conformational transition from the prefusion state to the functional fusogenic form of the protein. The existence of potential pathogenetic differences among CMV gB genotypes has long been suspected.6In this context, several studies have investigated associations between gB genotypes and clinical outcomes -such as the development of end-organ disease or viremia- in diverse settings, including congenital CMV infection, allogeneic hematopoietic stem cell or solid organ transplantation, and human immunodeficiency virus infection, yielding inconsistent results. Previous reports have suggested a potential association between specific CMV gB genotypes and clinical outcomes in patients with anterior uveitis, corneal endotheliitis, or iridocyclitis.5,8,9 In a recent issue of theJournal of Medical Virology , Lestari and colleagues provide evidence supporting the hypothesis that genetic variations in the CMV gB gene may influence the pathogenesis of virus-induced ocular diseases.10 The authors first investigated whether there was an association between CMV gB genotypes and ocular tropism. To this end, they analyzed CMV PCR-positive aqueous or vitreous humor specimens from immunosuppressed patients with CMV retinitis -most of whom had undergone allogeneic hematopoietic stem cell transplantation (allo-HCT)- as well as from immunocompetent individuals with anterior uveitis and from patients with chronic retinal necrosis (CRN) exhibiting mild to moderate immunosuppression, either systemic or local (intravitreal triamcinolone acetonide injection). Blood samples from immunosuppressed patients, predominantly allo-HCT recipients with CMV pp65 antigenemia, were used as controls. CMV gB genotyping was performed using a multiplex sequence-specific PCR assay, and for some specimens, Sanger sequencing of amplicons spanning the furin cleavage site region of the UL55 gene. A differential distribution of CMV gB genotypes was observed between ocular and blood samples, with CMV gB3 genotype predominating in ocular specimens followed by gB1 (both accounted for 83% of genotypes detected in ocular fluid specimens) regardless of the type of ocular disease and, indirectly, the level of immunocompetence. In contrast, the CMV gB2 genotype was the most prevalent in blood specimens. Notably, mixed CMV gB genotypes were more frequently detected in blood than in ocular simples. While these data pointed to gB3 genotype, and gB1 to a lesser extent, displaying a higher tropism for ocular tissues their interpretation should be cautious as only three patients (all with retinitis) had paired blood and ocular specimens analyzed.An interesting observation was that, among patients with anterior uveitis, CMV DNA loads in ocular fluids were significantly higher in gB1- and gB3-positive specimens than in those harboring gB2. This led the authors to hypothesize that gB1 and gB3 genotypes may possess enhanced replicative capacity, facilitating hematogenous dissemination and seeding of ocular tissues. However, since viral loads were not normalized to the interval between disease onset and sample collection, this assumption should be interpreted with caution. In addition, unfortunately only 3 specimens contained the gB2 genotype. In line with this hypothesis, a single amino acid substitution (K518R) within gB domain III, located near the top of the gB core, was detected in most gB1- and gB3-positive ocular fluid samples but not in gB2 specimens, which were predominantly from blood. In silico modeling predicts that this mutation may enhance gB stability, potentially increasing viral entry efficiency and facilitating cell-to-cell spread. Interestingly, the K518R mutation appears to be quite common among Asian CMV strains and rare in CMV strains of European origin. The relevance of these findings should nevertheless be interpreted cautiously, given the complex nature of viral entry into host cells -a process in which a wide array of viral glycoproteins plays a crucial role.1Ultimately, further in vitro experiments using animal models or polarized epithelial cell culture systems should provide definitive insights into genotype-specific replicative behavior and ocular pathogenicity. Enhanced immunoscape capacity of gB1 and gB3 genotypes compared to gB2 may also help explain differences in viral loads. Using predictive binding algorithms (NetMHCIIpan-4.3) alongside a flow-cytometry-based peptide-HLA II binding assay, the authors identified a peptide pair, gB190-204, that was identical between gB1 and gB3 but differed from the corresponding gB2 sequence, exhibiting more than a two-fold difference in predicted binding affinity between gB genotypes (lower in gB1/3) on two HLA II allotypes present in the cohort (DPB1*0402 and DQB1*0301). Importantly, the gB190–204 sequence was present in ocular specimens as shown by amplicon-targeted sequencing. Although the data is interesting, adaptive immune responses against CMV are complex and redundant and the matrix protein pp65 and the immediate-early-protein-1 (IE-1) are immunodominant in most individuals.1 In summary, the observations made by Lestari and colleagues further reinforce the idea that pathogenetic differences may certainly exist across CMV strains that may impact on the risk and outcome of ocular diseases and by extension other clinical conditions linked to CMV infection both in immunocompetent and immunocompromised patients.

Ángela Sánchez

and 7 more

A new perspective on Torquetenovirus DNAemia as a biomarker of immunosuppression and inflammationDavid Navarro1,2,31Microbiology Service, Clinic University Hospital, INCLIVA Health Research Institute, Valencia, Spain.2CIBER de Enfermedades Infecciosas, Instituto de Salud Carlos III, Madrid, Spain.3Department of Medicine, School of Medicine, University of Valencia, Valencia, Spain.*Correspondence:David Navarro, Microbiology Service, Hospital Clínico Universitario, Instituto de Investigación INCLIVA, Av. Blasco Ibáñez 17, 46010 Valencia, Spain. Phone: 34(96)1973500; Fax: 34(96)3864173; Email: david.navarro@uv.es.Torquetenovirus (TTV) is a prototypical Anelloviridae species belonging to the genus Alphatorquevirus , which comprise small, non-enveloped particles harboring a single-stranded circular DNA genome of approximately 3,800 nucleotides in length containing at least four overlapping open reading frames (ORFs).1 Most individuals become infected with TTV early in childhood, leading to a lifelong persistent infection at multiple body sites, although no disease has been directly attributed to it;2 in fact, TTV is a highly abundant component of the human virome in healthy individuals and as such viral DNAemia is frequently measurable.3,4 TTV replication in humans is strictly controlled by T-cell–dependent effector mechanisms, which explains the relative stability of viral loads in blood in immunocompetent subjects.5 In contrast, TTV DNA load fluctuates widely in immunosuppressed individuals, such as solid organ transplant (SOT) recipients, showing a clear direct relationship between the magnitude of plasma viral loads and the degree of immunosuppression.6.7 In this sense, peripheral blood TTV DNA load behaves as an “immunometer” in SOT patients, as low viral loads may anticipate allograft rejection, whereas high viral loads may predict the occurrence of infectious events.6,7In non-canonically immunosuppressed populations, such as the elderly, TTV DNA loads are substantially higher compared with younger adults, and their magnitude has been associated with physical frailty and increased mortality risk, thus serving as a marker of immunosenescence.8 Data obtained from in vitro models indicate that TTV may stimulate inflammatory responses; conversely, pro-inflammatory conditions may enhance TTV replication.6 In this context, high plasma TTV DNA loads have been reported in individuals with chronic inflammatory lung disorders—such as asthma, chronic bronchiectasis, or chronic obstructive pulmonary disease—as well as in Crohn’s disease, when compared with healthy individuals.2,8 Moreover, elevated TTV DNAemia has been observed in patients with systemic inflammation, including those with bacterial sepsis or COVID-19.8Alphatorquevirus species exhibit extensive genetic diversity. Based on sequence identity within the ORF1 coding region, at least 20 human-infecting TTV species—which may co-exist within a single individual—have been identified. While certain species appear to be more prevalent in specific clinical contexts (e.g., TTV3, TTV5, and TTV9 in immunocompromised patients, or TTV1 and TTV2 in autoimmune disorders), the clinical relevance, if any, of TTV species diversity remains largely unknown.In this context, a recent study published in the Journal of Medical Virology by Novazzi and colleagues postulates, for the first time, that TTV species diversity may represent a novel marker of immune dysregulation in the elderly.9 The authors collected peripheral blood samples from 300 randomly selected, age-stratified adults as part of a multicenter European project primarily aimed at identifying biomarkers of human aging. Participants were grouped into three categories based on their age, degree of immunocompetence as inferred from the CD4/CD8 ratio and CMV IgG levels, and their overall inflammatory status as determined by several ad-hoc biomarkers such as C-reactive protein (CRP), α-2 macroglobulin, ferritin, ceruloplasmin and the neutrophil-to-lymphocyte ratio, among others.Three cohorts were established: cohort A consisted of seemingly immunocompetent young adults (35–45 years) with no signs of increased inflammation; cohort B comprised older individuals (65–75 years) displaying mildly reduced immunocompetence and low levels of inflammatory markers; and cohort C included aged individuals (65–75 years) with signs of immunosenescence and a relatively high inflammatory status.In addition to quantifying TTV DNA load in plasma samples using a laboratory-developed universal TTV assay, the authors employed a short-read next-generation sequencing approach (Illumina) to assess intra-host TTV species diversity. Interestingly, cohort C exhibited significantly greater richness and diversity compared with cohorts A and B, while these parameters did not differ substantially between cohorts A and B. Importantly, certain TTV species were associated with decreased CD4 and NK cell percentages, a low CD4/CD8 ratio, and a reduction in the number of T-cell receptor excision circles—all hallmarks of immunosenescence. Moreover, some TTV species appeared to be more prevalent in cohort C individuals compared with the other two cohorts, and notably, a direct correlation was found between the number of detected TTV species and age, degree of immune impairment, and TTV load. Additional evidence linking TTV species diversity to immune aging and inflammation was provided by experiments analyzing the association between TTV species diversity and PARP-1 (poly[ADP-ribose] polymerase-1) activity, as measured by flow cytometry (fluorescence-activated cell sorting). In these experiments, the activity of PARP-1—a key cellular stress regulator and strong promoter of inflammation10—was found to be increased in individuals displaying a higher number of TTV species. Finally, although no consistent association was found between species diversity and levels of inflammatory biomarkers, TTV DNA load was directly correlated with CRP and α-2-macroglobulin levels. From a mechanistic standpoint, the authors propose that the relationship between species diversity and age-related immune dysregulation may reflect decreased immune pressure, which would pave the way for the expansion of better-adapted TTV species with enhanced replication capacity or immunoevasion properties. Nevertheless, an enhanced direct pathogenetic effect of certain TTV species over others on immune homeostasis cannot be ruled out.An important drawback of the study is that sequential monitoring of TTV species diversity was not performed; plausibly, TTV species richness or diversity may vary over time even in non-severely immunosuppressed individuals. Despite the limitations of the study—clearly acknowledged by the authors—it paves the way for incorporating TTV species profiling into the toolbox of studies aiming to predict the risk of age-associated diseases pathogenetically linked to immunosenescence and systemic inflammation. Nevertheless, as the authors point out, well-powered prospective longitudinal studies are needed to validate this assumption.

Ángela Sánchez

and 14 more

We evaluated homologous neutralizing antibody (NtAb) and T-cell responses after receipt of a JN.1-adapted mRNA vaccine in a mixed population comprising healthy controls (HC) (n=15), end-stage chronic kidney disease (CKD) patients (n=17), and allogeneic hematopoietic stem cell transplant recipients (allo-HCT) (n=13). Most participants (42/45) were SARS-CoV-2-experienced at the time of immunological testing. JN.1-spike-binding NtAbs were measured with a vesicular stomatitis virus pseudotype-based neutralization assay, whereas interferon (IFN)-γ-producing spike-directed CD4 + or CD8 + T-cell frequencies were enumerated using flow cytometry for intracellular staining. All participants had detectable JN.1 NtAbs at baseline; overall, JN.1-NtAb levels increased in HC (median, ∼1 log 10; P < 0.001) and CKD patients (median, 0.8 log 10; P=0.06) but not in allo-HCT ( P=0.10). JN.1-NtAb titers measured after vaccination were significantly higher in HC than in CKD and allo-HCT ( P=0.01). The number of participants exhibiting detectable JN.1 T-cell responses did not significantly increase following booster vaccination in any of the study groups. Likewise, receipt of the Omicron JN.1 vaccine failed to significantly boost SARS-CoV-2 JN.1 CD8 + and CD4 + T-cell frequencies in any study groups. Nevertheless, trends in JN.1 T-cell frequencies following the JN-1 booster varied widely on an individual basis. JN.1 T-cell frequencies following JN.1 vaccination were comparable across study groups. Our results could have implications for the development of vaccines for future SARS-CoV-2 variants and the optimization of booster vaccination policies in highly vulnerable individuals.

Ángela Sánchez

and 8 more

Memory B cells (MBCs) are responsible for maintaining long-lasting functional B-cell immune responses. Little is known about the kinetics of peripheral blood (PB) SARS-CoV-2 vaccine-induced MBCs in end-stage chronic kidney disease (CKD) patients undergoing replacement therapies. We investigated this issue in this prospective, observational cohort study including 27 patients (9 females and 18 males; median age, 68.4 years, range 48-82) comprising 20 hemodialysis patients and 7 Kidney transplant recipients. SARS-CoV-2-Receptor-Binding Domain (RBD)-targeted PB-MBCs were enumerated by flow cytometry using a tetramer-binding assay after the second COVID-19 mRNA vaccine dose (Post-2D), before (Pre-3D), and after the first mRNA vaccine booster dose (Post-3D). Commercially available electrochemiluminescent immunoassays were used to measure total anti-RBD antibodies targeting an IgG against the S trimeric protein. Overall, 18/27 patients (66.6%) exhibited detectable RBD-MBC responses at Post-2D, 12/27 (44.4%) at Pre-3D, and 16/27 (59.2%) at Post-3D. RBD-MBC levels dropped non-significantly between post-2D and Pre-3D ( P=0.38). A non-significant increase in RBD-MBCs was noticed post-3D ( P=0.65). Overall, both antibody specificities displayed the same dynamics but the drop in anti-trimeric spike antibody levels between Post-2D and Pre-3D and increases post-3D were statistically significant ( P<0.001). No correlation (rho = 0.05; P=0.64) was observed between total antibodies against RBD and RBD-MBC counts. The correlation between IgG antibodies against the trimeric S protein and SARS-CoV-2 RBD-MBC counts was very weak (rho, 0.18; P=0.11). In summary, waning RBD-MBC counts Pre-3D and increases post-3D are less marked than that of anti-RBD and anti-S trimeric antibodies.

Estela Giménez

and 9 more

We compared the performance of the VIDAS® Cytomegalovirus (CMV)-Interferon-gamma release assay (IGRA) with that of laboratory-developed flow cytometry for intracellular cytokine staining (FC-ICS) for the assessment of CMV-specific interferon-gamma (IFN-γ)-producing T-cell responses (CMV-CMI). A total of 147 blood specimens from 78 adult participants were collected: 11 healthy controls, 34 hematological patients (HP), of which 32 had undergone allogeneic hematopoietic cell transplantation (allo-HCT), and 33 Kidney transplant recipients. Of the 147 specimens, 96 tested positive, 24 negative, 25 indeterminate, and 2 were invalid by the VIDAS® CMV IGRA. A total of 137 specimens were tested by FC-ICS, of which 107 returned positive results. There were 27 discrepancies across the assays among specimens yielding interpretable results, of which 14 tested VIDAS® CMV IGRA-positive/FC-ICS-negative and 12 VIDAS® CMV IGRA-negative/FC-ICS-positive. The overall agreement between immunoassays was 78%, and the Kappa coefficient was 0.34 (0.52 for HP). Differences in identifying CMV-infected (CMV IgG-positive) and uninfected participants (CMV IgG-negative) were noticed across both assays. The overall correlation (rho values) between IFN-γ concentrations (IU/ml) measured by the VIDAS® CMV IGRA and CMV-specific IFN-γ-producing T-cell frequencies were 0.27 for CD4 + and 0.33 for CD8 + T cells ( P=0.001). In HP, the correlation was stronger (0.48 for CD4 + and 0.49 for CD8 + T cells). A trend toward a direct association between the presence of undetectable VIDAS® CMV IGRA or FC-ICS responses and subsequent occurrence of CMV DNAemia was observed. In summary, our data lend support to the potential utility of the VIDAS® CMV IGRA to assess CMV-CMI in transplant recipients.

David Navarro

and 13 more

Background: It is unknown whether Torque Teno virus (TTV) DNA load monitoring could anticipate the development of infectious events in hematological patients undergoing treatment with small molecular targeting agents. We characterized the kinetics of plasma TTV DNA in patients treated with ibrutinib or ruxolitinib and assessed whether TTV DNA load monitoring could predict the occurrence of Cytomegalovirus (CMV) DNAemia or the magnitude of CMV-specific T-cell responses. Methods: Multicenter, retrospective, observational study, recruiting 20 patients treated with ibrutinib and 21 with ruxolitinib. Plasma TTV and CMV DNA loads were quantified by real-time PCR at baseline and days +15, +30, +45, +60, +75, +90, +120, +150, and +180 after treatment inception. Enumeration of CMV-specific IFN-γ-producing CD8 + and CD4 + T cells in whole blood was performed by flow cytometry. Results: Median TTV DNA load in ibrutinib-treated patients increased significantly ( P=0.025) from baseline (median, 5.76 log 10 copies/ml) to day +120 (median, 7.83 log 10 copies/ml). A moderate inverse correlation (Rho=-0.46; P<0.001) was found between TTV DNA load and absolute lymphocyte count (ALC). In ruxolitinib-treated patients, TTV DNA load quantified at baseline was not significantly different from that measured after treatment inception ( P ≥0.12). TTV DNA loads were not predictive of the subsequent occurrence of CMV DNAemia in either patient group. No correlation was observed between TTV DNA loads and CMV-specific IFN-γ-producing CD8 + and CD4 + T cell counts in either patient group. Conclusion: The data did not support the hypothesis that TTV DNA load monitoring in hematological patients treated with ibrutinib or ruxolitinib could be useful to predict either the occurrence of CMV DNAemia or the level of CMV-specific reconstitution.