Development of 3-D topometric imaging and 2-D photogrammetry methods for
high-throughput phenotyping of perennial ryegrass spikes
Abstract
Advances in technology have increased adoption of high-throughput
phenotyping (HTP) methodologies, potentially replacing laborious and
time-consuming measurements and data recording. One promising HTP tool
for fine-featured and small-sized characteristics are 3-dimensional
(3-D) scanning and imaging systems, but the utility of present 2-D
technology has not been fully explored for this purpose. The objective
of this work was to develop 2-D photogrammetric and 3-D topometric
imaging methods for HTP of spike characteristics in perennial ryegrass
(Lolium perenne L.) with special attention to traits that might be
associated with seed retention. These HTP imaging systems were compared
with direct data capture by hand in spikes of 21 diverse global
accessions of perennial ryegrass. The Fiji (ImageJ) open source imaging
software was used for photogrammetric analysis of spike structure
including spike length, spikelet number, internode length and 2-D
curvature of the spike. The optical sensor Artec Space Spider 3-D
scanner was used to generate dense 3-D point clouds to measure spike
length, spikelet number, internode length, spikelet length, spikelet
angle, and 3-D curvature of the spike. Both methods were found to
accurately characterize the subject, the 3-D method was slower than 2-D
but was more (P ≤ 0.01) precise than 2-D image analysis with a linear
measurement deviation of only 0.17%. Fiji was effectively used for
post-processing image analysis and the Space Spider can be used directly
in the field to support HTP data collection. This non-destructive field
measurement system facilitates HTP in perennial ryegrass spikes and
likely in other applications.