Solar-Induced Chlorophyll Fluorescence (SIF) is a powerful proxy for gross primary productivity (GPP) in Boreal ecosystems. However, SIF and GPP are fundamentally different quantities that describe distinct, but related, physiological processes. Recent work has highlighted non-linearities between SIF and GPP at finer spatial (leaf- to canopy- level) and temporal (half-hourly) scales. Therefore, questions have arisen about when, where, and why SIF is a good proxy for GPP and what the potential sources for divergence between the two are. The goal of this study is to answer two specific questions: 1) At what temporal scale is SIF a good proxy for GPP and 2) What are the predominant physical and ecophysiological drivers of nonlinearity between SIF and GPP in boreal ecosystems? We collected tower-based measurements of SIF (and other common vegetation indices) with PhotoSpec (a custom spectrometer system) and eddy-covariance GPP data at a 30-minute resolution at the Southern Old Black Spruce Site (SOBS) in Saskatchewan, CA. We applied a combination of statistical and machine learning approaches to disentangle the influence of structural/illumination effects and ecophysiological variations on the SIF signal. Our results show that at a high temporal resolution (half-hourly), SIF and GPP are predominantly dependent on photosynthetically active radiation (PAR). Therefore, the non-linear light response of GPP drives non-linearity between SIF and GPP. Additionally, canopy structure and illumination effects become important to the SIF signal at high temporal resolutions. At the seasonal timescale, SIF and GPP exhibit co-varying responses to PAR, even when accounting for changes in canopy structure. We attribute changes in the light responses of SIF and GPP to sustained photoprotection over winter which co-varies with changes in temperature. Finally, we show that the relationship between SIF and GPP has a seasonal dependence caused by small differences between the light use efficiencies of fluorescence and photosynthesis. Accounting for this seasonally variable relationship will improve the use of SIF as a proxy for GPP.