Host-pathogen system The Bayesian state-space model The Bayesian state-space model The Bayesian state-space model Inferred disease parameters General ecological finding Reference
Observed time series Observed time series Unobserved State
Serology Other data
Swine Influenza in domesticated Chinese swine Virological Probability of exposure Force-of-infection; risk of exposure Early life exposure to Influenza in swine populations is increasing *
CDV in lions (Panthera leo) and domesticated dogs (Canis lupus familiaris) regional vaccination coverage Probability of infection Seroprevalence; impact of vaccination CDV infection in lions is becoming more frequent
Morogoro virus in multimammate mice (Mastomys natalensis) weight; infection patterns Natural infection patterns Time of infection No evidence suggesting that natural and laboratory infection patterns are not similar
Hantavirus in striped field mice (Apodemus agrarius) NA Seasonal transmission rates Risk of hemorrhagic fever with renal syndrome (caused by Hantavirus) in human populations Hantavirus spillover is driven by seasonality and dynamics of Hantavirus in rodent reservoir populations
CDV in grizzly bears (Ursus arctos) and wolves (Canis lupus) NA Timing of infection CDV exposure in wolves and bears How CDV dynamics vary temporally in wolves and bears
Fox (Vulpes vulpes) rabies NA Demographic data, spatial data, vaccination rate Transmission heterogeneity; probablility of infected fox moving area; observation rate; environmental noise Information about the local transmissive processes of rabies in foxes
Avian malaria (Plasmodium relictum) in Hawaiian honeycreeper species NA Age-prevalence model, demographic data Prevalence; intensity of infection Patterns of prevalence, transmission, and mortality rates