Software Application
Python Packages Python Packages
Biopython (Cock et al., 2009) Biopython is a set of freely available tools for common bioinformatics tasks including biological computation.
PyQt5 (https://pypi.org/project/PyQt5/) PyQt is a Python binding of the cross-platform GUI toolkit Qt.
gffutils (https://github.com/daler/gffutils) gffutils is for working with and manipulating the GFF and GTF format files typically used for genomic annotations.
Pyfastx (Du et al., 2021) The pyfastx is a lightweight Python C extension that enables users to randomly access sequences from plain and gzipped FASTA/Q files.
Executable Programs Executable Programs
BLAST+ (v2.11.0) (Camacho et al., 2009) BLAST+ is a sequence similarity searching tool with an enhancement of speed and query length.
BLAT (v3.2.1) (Altschul, 1997) BLAT is an alignment tool like BLAST and is useful for aligning long sequences and gapped mapping.