†Isolate names in bold indicate species for which
genomic DNAs were combined to make the mock community. The remaining
“isolates” refer to OTU identifications that were recovered after
amplification, sequencing, and bioinformatic processing.‡Lengths with ^ indicate that the
number is an estimate due to the reference sequence missing one or more
priming sites. Lengths with + indicate that the length
is an estimate based on a different isolate of the same species, with
the exception of Dimargaris xerosporica for which estimates are
based on the only species with available rDNA sequences, D.
bacillispora . ¶Bolded GenBank accession numbers
indicate isolates newly sequenced for this study.
Table 2. Results of PERMANOVA and whether ANOVA analyses of theB sim output were significant for all fungi and early diverging
fungal (EDF) communities recovered by each primer set (ITS1F/ITS2,
LROR/LR3, LR22F/LR3) by sites within states (California, CA and Florida,
FL) and by sample type (including invertebrates, mud, soil, and water),
as well as the interaction between site and sample type, with asterisks
indicating significant p-values (<0.05).