References
Abarenkov, K., Henrik Nilsson, R., Larsson, K.-H., Alexander, I.J., Eberhardt, U., Erland, S., et al. (2010). The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytol. , 186, 281–285.
Agrios, G. (2005). Plant Pathology, 5th ed. Academic Press, New York, USA.
Alberts, J.F., Gelderblom, W.C.A., Botha, A. & van Zyl, W.H. (2009). Degradation of aflatoxin B1 by fungal laccase enzymes. Int. J. Food Microbiol. , 135, 47–52.
Albornoz, F.E., Burgess, T.I., Lambers, H., Etchells, H. & Laliberté, E. (2017). Native soilborne pathogens equalize differences in competitive ability between plants of contrasting nutrient-acquisition strategies. J. Ecol. , 105, 549–557.
Aldorfová, A., Knobová, P. & Münzbergová, Z. (2020). Plant–soil feedback contributes to predicting plant invasiveness of 68 alien plant species differing in invasive status. Oikos , 129, 1257–1270.
Bagchi, R., Gallery, R.E., Gripenberg, S., Gurr, S.J., Narayan, L., Addis, C.E., et al. (2014). Pathogens and insect herbivores drive rainforest plant diversity and composition. Nature , 506, 85–88.
Bagchi, R., Press, M.C. & Scholes, J.D. (2010). Evolutionary history and distance dependence control survival of dipterocarp seedlings.Ecol. Lett. , 13, 51–59.
Bais, H.P., Weir, T.L., Perry, L.G., Gilroy, S. & Vivanco, J.M. (2006). The role of root exudates in rhizosphere interactions with plants and other organisms. Annu. Rev. Plant Biol. , 57, 233–266.
Bauer, J.T., Mack, K.M.L. & Bever, J.D. (2015). Plant-soil feedbacks as drivers of succession: evidence from remnant and restored tallgrass prairies. Ecosphere , 6, art158.
Beckstead, J. & Parker, I.M. (2003). Invasiveness of Ammophila arenaria : release from soil-borne pathogens? Ecology , 84, 2824–2831.
Bennett, J.A. & Klironomos, J. (2018). Climate, but not trait, effects on plant-soil feedback depend on mycorrhizal type in temperate forests.Ecosphere , 9, e02132.
Berendse, F. (1994). Litter decomposability – a neglected component of plant fitness. J. Ecol. , 82, 187.
Bever, J.D. (1999). Dynamics within mutualism and the maintenance of diversity: inference from a model of interguild frequency dependence.Ecol. Lett. , 2, 52–61.
Bever, J.D. (2002). Negative feedback within a mutualism: host–specific growth of mycorrhizal fungi reduces plant benefit. Proc. R. Soc. London. Ser. B Biol. Sci. , 269, 2595–2601.
Bever, J.D., Dickie, I.A., Facelli, E., Facelli, J.M., Klironomos, J., Moora, M., et al. (2010). Rooting theories of plant community ecology in microbial interactions. Trends Ecol. Evol.
Bever, J.D., Mangan, S.A. & Alexander, H.M. (2015). Maintenance of plant species diversity by pathogens. Annu. Rev. Ecol. Evol. Syst. , 46, 305–325.
Bever, J.D., Westover, K.M. & Antonovics, J. (1997). Incorporating the soil community into plant population dynamics: the utility of the feedback approach. J. Ecol. , 85, 561.
Bezemer, T.M., Fountain, M.T., Barea, J.M., Christensen, S., Dekker, S.C., Duyts, H., et al. (2010). Divergent composition but similar function of soil food webs of individual plants: plant species and community effects. Ecology , 91, 3027–3036.
Brigham, L.A., Michaels, P.J. & Flores, H.E. (1999). Cell-specific production and antimicrobial activity of naphthoquinones in roots ofLithospermum erythrorhizon . Plant Physiol. , 119, 417–428.
Bryant, J.P., Provenza, F.D., Pastor, J., Reichardt, P.B., Clausen, T.P. & du Toit, J.T. (1991). Interactions between woody plants and browsing mammals mediated by secondary metabolites. Annu. Rev. Ecol. Syst. , 22, 431–446.
Cáceres, M. De & Legendre, P. (2009). Associations between species and groups of sites: indices and statistical inference. Ecology , 90, 3566–3574.
Caporaso, J.G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F.D., Costello, E.K., et al. (2010). QIIME allows analysis of high-throughput community sequencing data. Nat. Methods , 7, 335–336.
Chagnon, P., Bradley, R.L. & Klironomos, J.N. (2020). Mycorrhizal network assembly in a community context: The presence of neighbours matters. J. Ecol. , 108, 366–377.
Chagnon, P.-L., Brown, C., Stotz, G.C. & Cahill, J.F. (2018). Soil biotic quality lacks spatial structure and is positively associated with fertility in a northern grassland. J. Ecol. , 106, 195–206.
Chapin, F.S. (1980). The mineral nutrition of wild plants. Annu. Rev. Ecol. Syst. , 11, 233–260.
Chapin, F.S. (1991). Integrated responses of plants to stress.Bioscience , 41, 29–36.
Chapin, F.S., Vitousek, P.M. & Van Cleve, K. (1986). The nature of nutrient limitation in plant communities. Am. Nat. , 127, 48–58.
Cortois, R., Schröder‐Georgi, T., Weigelt, A., Putten, W.H. & De Deyn, G.B. (2016). Plant–soil feedbacks: role of plant functional group and plant traits. J. Ecol. , 104, 1608–1617.
de Kroon, H., Hendriks, M., van Ruijven, J., Ravenek, J., Padilla, F.M., Jongejans, E., et al. (2012). Root responses to nutrients and soil biota: drivers of species coexistence and ecosystem productivity.J. Ecol. , 100, 6–15.
Delgado-Baquerizo, M., Maestre, F.T., Reich, P.B., Jeffries, T.C., Gaitan, J.J., Encinar, D., et al. (2016). Microbial diversity drives multifunctionality in terrestrial ecosystems. Nat. Commun. , 7, 10541.
Dobson, A. & Crawley, M. (1994). Pathogens and the structure of plant communities. Trends Ecol. Evol. , 9, 393–398.
Domínguez‐Begines, J., Ávila, J.M., García, L. V. & Gómez‐Aparicio, L. (2020). Soil‐borne pathogens as determinants of regeneration patterns at community level in Mediterranean forests. New Phytol. , 227, 588–600.
Dufrene, M. & Legendre, P. (1997). Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecol. Monogr. , 67, 345.
Dumbrell, A.J., Nelson, M., Helgason, T., Dytham, C. & Fitter, A.H. (2010). Relative roles of niche and neutral processes in structuring a soil microbial community. ISME J. , 4, 337–345.
Duponnois, R. & Garbaye, J. (1991). Mycorrhization helper bacteria associated with the Douglas fir-Laccaria laccata symbiosis: effects in aseptic and in glasshouse conditions. Ann. des Sci. For. , 48, 239–251.
Eom, A.H., Hartnett, D.C. & Wilson, G.W.T. (2000). Host plant species effects on arbuscular mycorrhizal fungal communities in tallgrass prairie. Oecologia , 122, 435–444.
Fireman, M. & Hayward, H.E. (1952). Indicator significance of some shrubs in the escalante desert, Utah. Bot. Gaz. , 114, 143–155.
Fraser, L.H., Pither, J., Jentsch, A., Sternberg, M., Zobel, M., Askarizadeh, D., et al. (2015). Worldwide evidence of a unimodal relationship between productivity and plant species richness.Science , 349, 302–305.
Gardes, M. & Bruns, T.D. (1993). ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Mol. Ecol. , 2, 113–118.
Gilbert, J.A., Jansson, J.K. & Knight, R. (2014). The Earth Microbiome project: successes and aspirations. BMC Biol. , 12, 69.
Hector, A., Hautier, Y., Saner, P., Wacker, L., Bagchi, R., Joshi, J.,et al. (2010). General stabilizing effects of plant diversity on grassland productivity through population asynchrony and overyielding.Ecology , 91, 2213–2220.
Hill, M.O. (1973). Diversity and evenness: a unifying notation and its consequences. Ecology , 54, 427–432.
Hirsch, A. M. (2004). Plant-microbe symbioses: a continuum from commensalism to parasitism. Symbiosis , 37, 345-363.
Hobbie, S.E. (1992). Effects of plant species on nutrient cycling.Trends Ecol. Evol. , 7, 336–339.
Hobbie, S.E. (2015). Plant species effects on nutrient cycling: revisiting litter feedbacks. Trends Ecol. Evol. , 30, 357–363.
Hodge, A., Robinson, D. & Fitter, A. (2000). Are microorganisms more effective than plants at competing for nitrogen? Trends Plant Sci. , 5, 304–308.
Holzapfel, C., Shahrokh, P. & Kafkewitz, D. (2010). Polyphenol oxidase activity in the roots of seedlings of Bromus (Poaceae) and other grass genera. Am. J. Bot. , 97, 1195–1199.
Horner, J.D., Gosz, J.R. & Cates, R.G. (1988). The role of carbon-based plant secondary metabolites in decomposition in terrestrial ecosystems.Am. Nat. , 132, 869–883.
in ‘t Zandt, D., Hoekstra, N.J., Wagemaker, C.A.M., Caluwe, H., Smit‐Tiekstra, A.E., Visser, E.J.W., et al. . Local soil legacy effects in a multispecies grassland community are underlain by root foraging and soil nutrient availability. J. Ecol. , in press. doi : 10.1111/1365-2745.13449
Johnson, N.C., Graham, J.H. & Smith, F.A. (1997). Functioning of mycorrhizal associations along the mutualism-parasitism continuum.New Phytol. , 135, 575–585.
Klironomos, J.N. (2002). Feedback with soil biota contributes to plant rarity and invasiveness in communities. Nature , 417, 67–70.
Kuiters, A.T. (1990). Role of phenolic substances from decomposing forest litter in plant- soil interactions. Acta Bot. Neerl.
Kulmatiski, A., Beard, K.H., Stevens, J.R. & Cobbold, S.M. (2008). Plant-soil feedbacks: a meta-analytical review. Ecol. Lett. , 11, 980–992.
Kuzyakov, Y. & Xu, X. (2013). Competition between roots and microorganisms for nitrogen: mechanisms and ecological relevance.New Phytol. , 198, 656–669.
Laforest-Lapointe, I., Paquette, A., Messier, C. & Kembel, S.W. (2017). Leaf bacterial diversity mediates plant diversity and ecosystem function relationships. Nature , 546, 145–147.
Laliberté, E., Lambers, H., Burgess, T.I. & Wright, S.J. (2015). Phosphorus limitation, soil-borne pathogens and the coexistence of plant species in hyperdiverse forests and shrublands. New Phytol. , 206, 507–521.
Liu, Q., Qiao, N., Xu, X., Xin, X., Han, J.Y., Tian, Y., et al.(2016). Nitrogen acquisition by plants and microorganisms in a temperate grassland. Sci. Rep. , 6, 22642.
Mangan, S.A., Schnitzer, S.A., Herre, E.A., Mack, K.M.L., Valencia, M.C., Sanchez, E.I., et al. (2010). Negative plant–soil feedback predicts tree-species relative abundance in a tropical forest.Nature , 466, 752–755.
Marschner, P., Crowley, D. & Rengel, Z. (2011). Rhizosphere interactions between microorganisms and plants govern iron and phosphorus acquisition along the root axis – model and research methods. Soil Biol. Biochem. , 43, 883–894.
Mills, K.E. & Bever, J.D. (1998). Maintenance of diversity within plant communities: Soil pathogens as agents of negative feedback.Ecology , 79, 1595-1601.
Nguyen, N.H., Song, Z., Bates, S.T., Branco, S., Tedersoo, L., Menke, J., et al. (2016). FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild. Fungal Ecol. , 20, 241–248.
Oksanen, J., Blanchet, F.G., Friendly, M., Kindt, R., Legendre, P., McGlinn, D., et al. (2019). vegan: community ecology package. R package version 2.5-2. Cran R .
Olff, H., Hoorens, B., de Goede, R.G.M., van der Putten, W.H. & Gleichman, J.M. (2000). Small-scale shifting mosaics of two dominant grassland species: the possible role of soil-borne pathogens.Oecologia , 125, 45–54.
Packer, A. & Clay, K. (2000). Soil pathogens and spatial patterns of seedling mortality in a temperate tree. Nature , 404, 278–281.
Brinkman, P.E., Van der Putten, W.H., Bakker, E.-J. & Verhoeven, K.J.F. (2010). Plant-soil feedback: experimental approaches, statistical analyses and ecological interpretations. J. Ecol. , 98, 1063–1073.
Philippot, L., Hallin, S., Börjesson, G. & Baggs, E.M. (2009). Biochemical cycling in the rhizosphere having an impact on global change. Plant Soil , 321, 61–81.
Philippot, L., Piutti, S., Martin-Laurent, F., Hallet, S. & Germon, J.C. (2002). Molecular analysis of the nitrate-reducing community from unplanted and maize-planted soils. Appl. Environ. Microbiol. , 68, 6121–6128.
Pinheiro, J., Bates, D., DebRoy, S., & Sarkar, D., R Core Team (2020). nlme: linear and nonlinear mixed effects models. R package version 3.1-148
Prosser, J.I. (1990). Autotrophic nitrification in bacteria. In:Advances in microbial physiology (Eds Rose, A.H., & Tempest, D.W.). pp. 125–181.
Pruesse, E., Quast, C., Knittel, K., Fuchs, B.M., Ludwig, W., Peplies, J., et al. (2007). SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. , 35, 7188–7196.
Reinhart, K.O., Packer, A., Van der Putten, W.H. & Clay, K. (2003). Plant-soil biota interactions and spatial distribution of black cherry in its native and invasive ranges. Ecol. Lett. , 6, 1046–1050.
Reinhart, K.O. (2012). The organization of plant communities: negative plant–soil feedbacks and semiarid grasslands. Ecology , 93, 2377–2385.
Revillini, D., Gehring, C.A. & Johnson, N.C. (2016). The role of locally adapted mycorrhizas and rhizobacteria in plant–soil feedback systems. Funct. Ecol. , 30, 1086–1098.
Rognes, T., Flouri, T., Nichols, B., Quince, C. & Mahé, F. (2016). VSEARCH: a versatile open source tool for metagenomics. PeerJ , 4, e2584.
Sarmiento, C., Zalamea, P.-C., Dalling, J.W., Davis, A.S., Stump, S.M., U’Ren, J.M., et al. (2017). Soilborne fungi have host affinity and host-specific effects on seed germination and survival in a lowland tropical forest. Proc. Natl. Acad. Sci. , 114, 11458–11463.
Schnitzer, S.A., Klironomos, J.N., HilleRisLambers, J., Kinkel, L.L., Reich, P.B., Xiao, K., et al. (2011). Soil microbes drive the classic plant diversity–productivity pattern. Ecology , 92, 296–303.
Shorthouse, J. (2010). Ecoregions of Canada’s prairie grasslands. In J. Shorthouse & K. D. Floate (Eds.), Arthropods of Canadian grasslands: Ecology and interactions in grassland habitats (pp. 53–81). Ottawa, Canada: Biological Survey of Canada.
Smith-Ramesh, L.M. & Reynolds, H.L. (2017). The next frontier of plant-soil feedback research: unraveling context dependence across biotic and abiotic gradients. J. Veg. Sci. , 28, 484–494.
Tardif, A. & Shipley, B. (2015). The relationship between functional dispersion of mixed-species leaf litter mixtures and species’ interactions during decomposition. Oikos , 124, 1050–1057.
Thrall, P.H., Bever, J.D., Mihail, J.D. & Alexander, H.M. (1997). The population dynamics of annual plants and soil-borne fungal pathogens.J. Ecol. , 85, 313.
Thrall, P.H., Hochberg, M.E., Burdon, J.J. & Bever, J.D. (2007). Coevolution of symbiotic mutualists and parasites in a community context. Trends Ecol. Evol. , 22, 120–126.
Tilman, D. (1980). Resources: a graphical-mechanistic approach to competition and predation. Am. Nat. , 116, 362–393.
van der Heijden, M.G.A., Klironomos, J.N., Ursic, M., Moutoglis, P., Streitwolf-Engel, R., Boller, T., et al. (1998). Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity. Nature , 396, 69–72.
van der Putten, W.H., Bardgett, R.D., Bever, J.D., Bezemer, T.M., Casper, B.B., Fukami, T., et al. (2013). Plant-soil feedbacks: the past, the present and future challenges. J. Ecol. , 101, 265–276.
Van der Putten, W.H., Van Dijk, C. & Peters, B.A.M. (1993). Plant-specific soil-borne diseases contribute to succession in foredune vegetation. Nature , 362, 53–56.
van Ruijven, J., Ampt, E., Francioli, D. & Mommer, L. (2020). Do soil‐borne fungal pathogens mediate plant diversity–productivity relationships? Evidence and future opportunities. J. Ecol. , 108, 1810–1821.
Vogelsang, K.M. & Bever, J.D. (2009). Mycorrhizal densities decline in association with nonnative plants and contribute to plant invasion.Ecology , 90, 399–407.
Wagg, C., Bender, S.F., Widmer, F. & van der Heijden, M.G.A. (2014). Soil biodiversity and soil community composition determine ecosystem multifunctionality. Proc. Natl. Acad. Sci. , 111, 5266–5270.
Wang, X., Wang, Z., Jiang, P., He, Y., Mu, Y., Lv, X., et al.(2018). Bacterial diversity and community structure in the rhizosphere of four Ferula species. Sci. Rep. , 8, 5345.
Wedin, D.A. & Tilman, D. (1990). Species effects on nitrogen cycling: a test with perennial grasses. Oecologia , 84, 433–441.
Weisskopf, L., Abou-mansour, E., Fromin, N., Tomasi, N., Santelia, D., Edelkott, I., et al. (2006). White lupin has developed a complex strategy to limit microbial degradation of secreted citrate required for phosphate acquisition. Plant, Cell Environ. , 29, 919–927.
White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Protocols. Elsevier, pp. 315–322.
Woodmansee, R. G., I. Vallis, & J. J. Mott . (1981). Grassland nitrogen. Ecological Bulletin, 33: 443– 462.
Yang, C., Hamel, C., Gan, Y. & Vujanovic, V. (2013). Pyrosequencing reveals how pulses influence rhizobacterial communities with feedback on wheat growth in the semiarid Prairie. Plant Soil , 367, 493–505.
Zhang, Q., Yang, R., Tang, J., Yang, H., Hu, S. & Chen, X. (2010). Positive feedback between mycorrhizal fungi and plants influences plant invasion success and resistance to invasion. PLoS One , 5, e12380.
Zinke, P.J. (1962). The pattern of influence of individual forest trees on soil properties. Ecology , 43, 130–133.