\textbf{ChLGX before and after super scaffolding with Stitch and Hybrid Map creation by Hybrid Scaffold.}
 (A) Alignment of Tcas5.2 \textit{in silico} maps to consensus genome maps for ChLGX. (B) Alignment of Tcas5.0 \textit{in silico} maps to consensus genome maps for ChLGX. (c) Alignment of Hybrid genome maps to consensus genome maps for ChLGX. Consensus genome maps are blue with molecule map coverage shown in dark blue). The \textit{in silico} maps are green with contigs overlaid as translucent colored squares. Only \textit{in silico} maps that align are displayed in IrysView. The single hybrid scaffold created for ChLGX is shown (yellow). Only new "hybridized" maps are shown in IrysView. Labels and alignments of labels are indicated with grey lines.