REFERENCES
Abu-Jamous, B., & Kelly, S. (2018). Clust: Automatic extraction of optimal co-expressed gene clusters from gene expression data.Genome Biology , 19 , 172. doi: 10.1186/s13059-018-1536-8
Adachi, M., Liu, Y., Fujii, K., Calderwood, S. K., Nakai, A., Imai, K., & Shinomura, Y. (2009). Oxidative stress impairs the heat stress response and delays unfolded protein recovery. PLoS one ,4 , e7719. doi: 10.1371/ journal.pone.0007719
Andrews, S. (2010). FastQC: a quality control tool for high throughput sequence data. Retrieved from http://www.bioinformatics.babraham.ac.uk/projects/fastqc
Bedulina, D. S., Evgen’ev, M. B., Timofeyev, M. A., Protopopova, M. V., Garbuz, D. G., Pavlichenko, V. V., …, & Zatsepina, O. G. (2013). Expression patterns and organization of the hsp70 genes correlate with thermotolerance in two congener endemic amphipod species (Eulimnogammarus cyaneus and E. verrucosus ) from Lake Baikal. Molecular Ecology, 22 , 1416−1430. doi: 10.1111/mec.12136
Bolger, A. M., Lohse, M., & Usadel, B. (2011). Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics, 30 , 2114–2120. doi: 10.1093/bioinformatics/btu170
Buckley, B. A., Gracey, A. Y., & Somero, G. N. (2006). The cellular response to heat stress in the goby Gillichthys mirabilis  : a cDNA microarray and protein-level analysis, Journal of Experimental Biology , 209 , 2660–2677. doi: 10.1242/ jeb.02292
Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K., & Madden, T. (2009). BLAST+: Architecture and applications.BMC Bioinformatics , 10, 421. doi: 10.1186/1471-2105-10-421.
Chen, N., Huang, Z., Lu, C., Shen, Y., Luo, X., Ke, C., & You, W. (2019). Different transcriptomic responses to thermal stress in heat-tolerant and heat-sensitive Pacific Abalones Indicated by cardiac performance. Frontiers in Physiology , 9 , 1895. doi: 10.3389/ fphys.2018.01895
Cintron, N. S., & Toft, D. (2006). Defining the requirements forHsp40 and Hsp70 in the Hsp90 chaperone pathway.The Journal of Biological Chemistry, 281 , 26235–26244. doi: 10.1074/jbc.M605417200
Csermely, P., Schnaider, T., Soti, C., Prohászka, Z., & Nardai, G. (1998). The 90-kDa molecular chaperone family: structure, function, and clinical applications. A comprehensive review. Pharmacology & Therapeutics, 79 (2), 129–168. doi: 10.1016/s0163-7258(98)00013-8
De Jong, L., Moreau, X., & Thiery, A. (2008). Expression of heat shock proteins as biomarker tool in aquatic invertebrates: actual knowledge and ongoing developments for the early detection of environmental changes and ecological risks. In F. Colombus (Ed), Heat shock proteins: International Research (pp.375-392). New York, NY: Nova Science Publishers.
DeBiasse, M. B., & Kelly, M. W. (2016). Plastic and evolved responses to global change: What can we learn from comparative transcriptomics?Journal of Heredity , 107 , 71–81. doi:10.1093/jhered/esv073
Emms, D. & Kelly, S. (2015). OrthoFinder: Solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy. Genome Biology, 16 , 157. doi:10.1186/s13059-015-0721-2
Feder, M. E., & Hofmann, G. E. (1999). Heat-shock proteins, molecular chaperones, and the stress response: evolutionary and ecological physiology. Annual Review of Physiology. 61 , 243–282. doi: 10.1146/annurev.physiol.61.1.243
Fontaneto, D., Giordani, I., Melone. G., & Serra, M. (2007). Disentangling the morphological stasis in two rotifer species of theBrachionus plicatilis species complex Hydrobiologia, 583 , 297–307. doi: 10.1007/s10750-007-0573-1
Fontaneto, D., Kaya, M., Herniou, E. A., & Barraclough, T. G. (2009). Molecular Phylogenetics and Evolution Extreme levels of hidden diversity in microscopic animals (Rotifera) revealed by DNA taxonomy.Molecular Phylogenetics and Evolution , 53 (1), 182–189. doi: 10.1016/j.ympev.2009.04.011
Gabaldón, C., Fontaneto, D., Carmona, M. J., Montero-Pau, J., & Serra, M. (2017). Ecological differentiation in cryptic rotifer species: what we can learn from the Brachionus plicatilis  complex.Hydrobiologia, 796 , 7–18. doi: 10.1007/s10750-016-2723-9
Gabaldón, C., Montero-Pau, J., Serra, M., & Carmona, M. J. (2013). Morphological similarity and ecological overlap in two rotifer species.PLoS one . 8:e57087. doi:10.1371/journal.pone.0057087
Gilbert, J. J. (1974). Dormancy in Rotifers. Transactions of the American Microscopical Society , 93 , 490–513. doi: 10.1038/NCLIMATE2810
Gómez, A., Serra, M., Carvalho, G. R., & Lunt, D. H. (2002). Speciation in ancient cryptic species complexes : evidence from the molecular phylogeny of Brachionus plicatilis (Rotifera), Evolution, 56 (7), 1431–1444. doi: 10.1111/j.0014-3820.2002.tb01455.x
Grabherr, M. G., Haas, B. J., Yassour, M., Levin, J. Z., Thompson, D. A., Amit, I., … Regev, A. (2011). Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnology, 29 , 644–652. doi: 10.1038/nbt.1883
Gribble, K. E., & Mark Welch, D. B. (2017). Genome-wide transcriptomics of aging in the rotifer Brachionus manjavacas , an emerging model system. BMC Genomics , 18 , 217. doi: 10.1186/s12864-017-3540-x
Guerra-moreno, A., Isasa, M., Bhanu, M. K., Waterman, D. P., Eapen, V. V, Gygi, S. P., & Hanna, J. (2015). Proteomic Analysis Identifies Ribosome Reduction as an Effective Proteotoxic Stress Response The Journal of Biological Chemistry , 290 (50), 29695–29706. doi: 10.1074/jbc.M115.684969
Guillard, R. R. L., & Lorenzen, C. J. (1972). Yellow-green algae with Chlorophyllide. Journal of Phycology , 8 , 10–14.
Cullum, A.J. (2008). Tolerance Range. In S. E. Jorgensen & B. Fath (Eds), Encyclopedia of ecology (pp. 3557–3564), London, UK: Elsevier.
Halliwell, B., & Whiteman, M. (2004). Measuring reactive species and oxidative damage in vivo and in cell culture: How should you do it and what do the results mean? British Journal of Pharmacology ,142 , 231–255. doi:10.1038/sj.bjp.0705776
Han, J., Jeong, C. B., Byeon, E. & Lee, J. S. (2018). Effects of temperature changes on the generation of reactive oxygen species and the expression and activity of glutathione‑S transferases in two congeneric copepods Tigriopus japonicus and Tigriopus kingsejongensis . Fisheries Science , 84 , 815–823. doi:10.1007/s12562-018-1224-3
Heise, K., Puntarulo, S., Pörtner, H. O., & Abele, D. (2003). Production of reactive oxygen species by isolated mitochondria of the Antarctic bivalve Laternula elliptica (King and Broderip) under heat stress. Comparative Biochemistry and Physiology - Part C: Toxicology & Pharmacology , 134 , 79–90. doi:10.1016/S1532-0456(02)00212-0
Herrmann, M., Ravindran, S. P., Schwenk, K., & Cordellier, M. (2018). Population transcriptomics in Daphnia : The role of thermal selection. Molecular Ecology, 27 , 387–402. doi: 10.1111/mec.14450
Hershey, A. E., Lamberti, G. A., Chaloner, D. T., & Northington, R. M. (2010). Aquatic insect ecology. In H. J. Thorp, & A. P. Covich (Eds),Ecology and classification of North American freshwater invertebrates, (pp. 659–694), London, UK: Elsevier.
Hyun, K., Jeon, J., Park, K., & Kim, J. (2017). Writing, erasing and reading histone lysine methylations. Experimental & Molecular Medicine, 49 , e324. doi:10.1038/ emm.2017.11
Kauler, P., & Enesco, H. E. (2011). The effect of temperature on life history parameters and cost of reproduction in the rotiferBrachionus calyciflorus , Journal of Freshwater Ecology, 26 , 399–408. doi: 10.1080/02705060.2011.563998
Keller, M., Sommer, A. M., Pörtner, H. O., Abele, D. (2004). Seasonality of energetic functioning and production of reactive oxygen species by lugworm (Arenicola marina ) mitochondria exposed to acute temperature changes. Journal of Experimental Biology, 207,2529–2538. doi: 10.1242/jeb.01050
Khang, T. F., & Lau, C. Y. (2015). Getting the most out of RNA-seq data analysis. PeerJ, 3 : e1360. doi: 10.7717/peerj.1360.
Kim, B. M., Kim, K., Choi, I. Y., & Rhee, J. S. (2017). Transcriptome response of the Pacific oyster, Crassostrea gigas susceptible to thermal stress: A comparison with the response of tolerant oyster.Molecular & Cellular Toxicology , 13 , 105–113. doi:10.1007/s13273-017-0011-z
Kim, B. M., Mirbahai, L., Mally, A., Kevin Chipman, J., Rhee, J. S., & Lee, J. S. (2016). Correlation between the DNA methyltransferase (Dnmt) gene family and genome-wide 5-methylcytosine (5mC) in rotifer, copepod, and fish. Genes Genomics, 38 , 13–23. doi: 10.1007/s13258-015-0333-y
Kim, H. S., Lee, B. Y., Han, J., Jeong, C. B., Hwang, D. S., Lee, M. C., … Lee, J. S. (2018). The genome of the freshwater monogonont rotiferBrachionus calyciflorus . Molecular Ecology Resources, 18 , 646–655. doi: 10.1111/1755-0998.12768
Li, B., & Dewey, C.N. (2011). RSEM: accurate transcript quantification from RNA-seq data with or without a reference genome. BMC Bioinformatics, 12 : 323.  doi: 10.1186/1471-2105-12-323.
Li, L., Niu, C., & Ma, R. (2010). Rapid temporal succession identified by COI of the rotifer Brachionus calyciflorus Pallas in Xihai Pond , Beijing , China , in relation to ecological traits. Journal of Plankton Research, 32 , 951-959. doi: 10.1093/plankt/fbq014
Lim, H. J., Kim, B. M., Hwang, I. J., Lee, J. S., Choi, I. Y., Kim, Y. J., & Rhee, J. S. (2016). Thermal stress induces a distinct transcriptome profile in the Pacific oyster Crassostrea gigas .Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics , 19 , 62–70. doi: 10.1016/j.cbd.2016.06.006
Lotka, A. J., 1907. Studies on the mode of growth of material aggregates. American Journal of Science 141 , 199–216.
Love, M. I., Huber, W, & Anders, S. (2014). Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology , 15 , 550. doi: 10.1186/s13059-014-0550-8
Lowe, C. D., Kemp, S. J., Díaz-Avalos, C., & Montagnes, D. J. S. (2007). How does salinity tolerance influence the distributions ofBrachionus plicatilis sibling species? Marine Biology ,150 , 377–386. doi:10.1007/s00227-006-0366-5
Luo, W. & Brouwer, C. (2013). “Pathview: an R/Bioconductor package for pathway-based data integration and visualization.”Bioinformatics, 29 ), 1830–1831. doi: 10.1093/bioinformatics/btt285
Luo, W., Friedman, M., Shedden, K., Hankenson, K., & Woolf, P. (2009). GAGE: generally applicable gene set enrichment for pathway analysis.BMC Bioinformatics , 10 , 161. doi:10.1186/1471-2105-10-161
Ma, Q., Xi Y. L., Zhang, J. Y., Wen, X. L., & Xiang, X. L. (2010). Differences in life table demography among eight geographic populations of Brachionus calyciflorus (Rotifera) from China.Limnologica , 40 , 16–22. doi: 10.1016/ j.limno.2009.05.002
Mayer, M.P., & Bukau, B. (2005). Hsp70 chaperones: cellular functions and molecular mechanism. Cellular and Molecular Life Sciences, 62, 670-84. doi: 10.1007/s00018-004-4464-6
Meistertzheim, A. L., Tanguy, A., Moraga, D., & Thébault, M. T. (2007). Identification of differentially expressed genes of the Pacific oysterCrassostrea gigas exposed to prolonged thermal stress. The FEBS Journal , 274, 6392–6402. doi:10.1111/j.1742-4658.2007.06156.x
Michaloudi, E., Papakostas, S., Stamou, G., Neděla, V., Tihlařıková, E., Zhang, W, & Declerck, S. A. J. (2018). Reverse taxonomy applied to theBrachionus calyciflorus cryptic species complex: Morphometric analysis confirms species delimitations revealed by molecular phylogenetic analysis and allows the (re) description of four species.PLoS one, 13 , e0203168. doi: 10.1371/journal.pone.0203168
Mills, S., Alcántara-Rodríguez, J. A., Ciros-Pérez, J., Gómez, A., Hagiwara, A., Galindo, K. H., … Walsh, E. J. (2017). Fifteen species in one: deciphering the Brachionus plicatilis species complex (Rotifera, Monogononta) through DNA taxonomy.Hydrobiologia , 796, 39–58. doi:10.1007/s10750-016-2725-7
Montero-Pau, J., Ramos-Rodríguez, E., Serra, M. & Gómez, A. (2011). Long-Term coexistence of rotifer cryptic species, PLoS on, 6 , e21530. doi: 10.1371/journal.pone.0021530.t001
Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A. C., Kanehisa, M. (2007). KAAS: An automatic genome annotation and pathway reconstruction server.Nucleic Acids Research, 35 , 182–185. doi: 10.1093/nar/gkm321
Paaijmans, K. P., Heinig, R. L., Seliga, R. A., Blanford, J. I., Blanford, S., Murdock, C. C., & Thomas M. B. (2013). Temperature variation makes ectotherms more sensitive to climate change.Global Change Biology , 19, 2373–2380. doi:10.1111/gcb.12240 PMID: 23630036
Papakostas, S., Michaloudi, E., Proios, K., Brehm, M., Verhage, L., Rota, J., … Declerck, S.A.J. (2016). Integrative taxonomy recognizes evolutionary units despite widespread mitonuclear discordance: evidence from a rotifer cryptic species complex.Systematic Biology, 65 , 508–524. doi: 10.1093/sysbio/syw016
Papakostas, S. N., Michaloudi, E., Triantafyllidis, A., Kappas, I., & Abatzopoulos. T. J. (2013). Allochronic divergence and clonal succession : two microevolutionary processes sculpturing population structure of Brachionus rotifers, Hydrobiologia, 700 , 33–45. doi: 10.1007/s10750-012-1217-7
Paraskevopoulou, S., Dennis, A. B., Weithoff, G., Hartmann, S., & Tiedemann, R. (2019). Within species expressed genetic variability and gene expression response to different temperatures in the rotiferBrachionus calyciflorus sensu stricto. PLoS one , 14, e0223134. doi:10.1371/journal.pone.0223134
Paraskevopoulou, S., Tiedemann, R., Weithoff, G. (2018). Differential response to heat stress among evolutionary lineages of an aquatic invertebrate species complex. Biology Letters, 14 , 20180498. doi: 10.1098/rsbl.2018.0498.
Parmesan, C. (2006). Ecological and evolutionary responses to recent climate change. Annual Review of Ecology, Evolution, and Systematics, 37 , 637–669. doi:10.1146/ annurev.ecolsys.37.091305.110100
Parsell, D. A., & Lindquist, S. (1993). The function of heat-shock proteins in stress tolerance: degradation and reactivation of damaged proteins. Annual Review of. Genetics, 27, 437–49. doi: 10.1146/annurev.ge.27.120193.002253
Podrabsky, J. E., & Somero, G. N. (2004). Changes in gene expression associated with acclimation to constant temperatures and fluctuating daily temperatures in an annual killifish Austrofundulus limnaeus. Journal of Experimental Biology, 207 , 2237–2254. doi: 10.1242/jeb.01016
Poole, R. W. (1974). Introduction to Quantitative Ecology . New York, NY: McGraw-Hill
Pourriot, R., & Snell, T. W. (1983). Resting eggs in rotifers.Hydrobiologia. 104, 213–224. doi:10.1007/BF00045970
R CoreTeam (2013). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. (http//:www.R-projest.org).
Rhee, J., Kim, R., Choi, H., Lee, J., Lee, Y., & Lee, J. (2011). Molecular and biochemical modulation of heat shock protein 20 (Hsp20 ) gene by temperature stress and hydrogen peroxide (H2O2) in the monogonont rotiferBrachionus sp. Comparative Biochemistry and Physiology, Part C , 154 , 19–27. doi: 10.1016/j.cbpc.2011.02.009
Romero, I. G., Ruvinsky, I., & Gilad, Y. (2012). Comparative studies of gene expression and the evolution of gene regulation. Nature Review Genetics, 13 , 505–516. doi: 10.1038/nrg3229
Sawada, M., & Carlson, J. C. (1990). Biochemical changes associated with the mechanism controlling superoxide radical formation in the aging rotifer. Journal of Cellular Biochemistry, 44 , 153–165. doi: 10.1002/jcb.240440304
Schoville, S. D., Barreto, F. S., Moy, G. W., Wolff, A., & Burton, R. S. (2012). Investigating the molecular basis of local adaptation to thermal stress: Population differences in gene expression across the transcriptome of the copepod Tigriopus californicus. BMC Evolution Biology, 12 (1), 170. doi: 10.1186/1471-2148-12-170.
Schröder, T. (2005). Diapause in Monogonont Rotifers.Hydrobiologia, 546, 291–306. doi:10.1007/s10750-005-4235-x
Segers, H. (2008). Global diversity of rotifers (Rotifera) in freshwater. Hydrobiologia , 595 , 49–59. doi:10.1007/s10750-007-9003-7
Seo, J. S., Lee, Y. M., Park, H. G., & Lee, J. S. (2006). The intertidal copepod Tigriopus japonicus small heat shock protein 20 gene (Hsp20 ) enhances thermotolerance of transformedEscherichia coli . Biochemical and Biophysical Research Communications. 340 , 901–908. doi: 10.1016/j.bbrc.2005.12.086
Serra, M. & Fontaneto, D. (2017). Speciation in the Brachionous plicatilis species complex. In A. Hagiwara & T. Yoshinaga (Eds),Rotifers , (pp.15–32), Singapore: Springer.
Smith, H. A., Burns, A. R., Shearer, T., & Snell, T. W. (2012). Three heat shock proteins are essential for rotifer thermotolerance.Journal of Experimental Marine Biology and Ecology, 413 , 1–6. doi: 10.1016/j.jembe.2011.11.027.
Smolina, I., Kollias, S., Møller, E. F., Lindeque, P., Sundaram, A. Y. M., Fernandes, J. M. O., & Hoarau G. (2015). Contrasting transcriptome response to thermal stress in two key zooplankton species, Calanus finmarchicus and C. glacialis . Marine Ecology Progress Series, 534 , 79–93. doi: 10.3354/meps11398
Snell, T. W., King, C. E. (1977). Lifespan and fecundity patterns in rotifers: the cost of reproduction. Evolution, 31 , 882–890. doi: 10.1111/j.1558-5646.1977.tb01082.x
Soneson, C., Love, M. I., & Robinson, M. D. (2016). Differential analyses for RNA-seq : transcript-level estimates improve gene-level inferences. F1000Research, 4, 1521. doi: 10.12688/f1000research.7563.1
Stelzer, C. P. (2005). Evolution of rotifer life histories.Hydrobiologia, 546 , 335–346. doi: 10.1007/s10750-005-4243-x
Stelzer, C. P. (2008). Obligate asex in a rotifer and the role of sexual signals. Journal of Evolutionary Biology , 21 , 287–293. doi:10.1111/j.1420-9101.2007.01437.x
Stelzer, C. P., Schmidt, J., Wiedlroither, A., & Riss, S. (2010). Loss of sexual reproduction and dwarfing in a small metazoan. PLoS one , 5 , e12854. doi: 10.1371/journal.pone.0012854
Stelzer, C. P. (2017). Life history variation in monogonont rotifers. In A. Hagiwara & T. Yoshinaga (Eds), Rotifers , (pp. 88–109), Singapore: Springer.
Suatoni, E., Vicario, S., Rice, S., Snell, T. W., & Caccone, A. (2006). An analysis of species boundaries and biogeographic patterns in a cryptic species complex : The rotifer — Brachionus plicatilis .Molecular Phylogenetics and Evolution, 41 , 86–98. doi: 10.1016/j.ympev.2006.04.025
Sun, Y., Hou, X., Xu, X., Zhang, L., Zhu, X., Huang, Y., & Chen, Y. (2017). Trade-off between reproduction and lifespan of the rotiferBrachionus plicatilis under different food conditions.Scientific Reports, 7 , 15370. doi: 10.1038/s41598-017-15863-y
Truebano, M., Burns, G., Thorne, M. A. S., Hillyard, G., Peck, L. S., Skibinski, D. O. F., & Clark, M. S. (2010). Transcriptional response to heat stress in the Antarctic bivalve Laternula elliptica .Journal of Experimental Marine Biology and Ecology, 391, 65–72. doi:10.1016/ j.jembe.2010.06.011
Walczyńska, A., & Serra, M. (2014). Inter- and intraspecific relationships between performance and temperature in a cryptic species complex of the rotifer Brachionus plicatilis .Hydrobiologia , 734 , 17–26. doi:10.1007/s10750-014-1859-8
Wang, X. L., Xiang, X. L., Xia, M. N., Han, Y., Huang, L., & Xi, Y. L. (2014). Differences in life history characteristics between two sibling species in Brachionus calyciflorus complex from tropical shallow lakes. Annales de Limnologie - International Journal of Limnology, 50, 289–298. doi: 10.1051/limn /2014024
Weithoff, G. & Wacker, A. (2007). The mode of nutrition of mixotrophic flagellates determines the food quality for their consumers.Functional Ecology , 21 , 1092–1098. doi: 10.1111/j.1365-2435.2007.01333.x
Weisse, T., Laufenstein, N. & Weithoff, G. (2013) Multiple environmental stressors confine the ecological niche of the rotiferCephalodella acidophila , Freshwater Biology , 58 , 1008-1015. doi: 10.1111/fwb.12104
Weithoff, G. (2004) Vertical niche separation of two consumers (Rotatoria) in an extreme habitat. Oecologia , 139 , 594-603. doi: 10.1007/s00442-004-1545-z
Weithoff, G. (2007) Dietary restriction in two rotifer species – the effect of the length of food deprivation on life span and reproduction.Oecologia , 153 , 303-308. doi: 10.1007/s00442-007-0739-6
Wen, X., Xi, Y., Zhang, G., Xue, Y., & Xiang, X. (2016). Coexistence of cryptic Brachionus calyciflorus (Rotifera) species: roles of environmental variables, Journal of Plankton Research, 38 , 478–489. doi: 10.1093/plankt/fbw006
Wickham, H. (2016). ggplot2: Elegant Graphics for Data Analysis(2nd ed.), New York, NY: Springer.
Wray, G. A., Hahn, M. W., Abouheif, E., Balhoff, J. P., Pizer, M., Rockman, M. V., & Romano, L. A. (2003). The evolution of transcriptional regulation in eukaryotes. Molecular Biology and Evolution , 20 , 1377-1419. doi:10.1093/molbev/msg140
Xiang, X. L., Xi, Y. L., Wen, X. L, & Ge, Y. L. (2017). Molecular phylogeny and population genetic differentiation patterns inBrachionus calyciflorus Pallas (Rotifera) complex from two lakes in China. International Journal of Limnology: Annales de Limnologie , 53 , 401–410. doi: 10.1051/limn/2017024
Xiang, X., Jiang, R., Tao, Y., Chen, Y., & Xi, Y. (2016). Differences in life history characteristics among three sympatric evolutionary species of the Rotaria rotatoria complex. Journal of Freshwater Ecology, 31, 351–360. doi:10.1080/02705060.2016.1141379
Xiang, X., Xi, Y., Wen, X., Zhang, G., Wang, J. X., & Hu, K. (2011). Patterns and processes in the genetic differentiation of theBrachionus calyciflorus complex, a passively dispersing freshwater zooplankton. Molecular Phylogenetics and Evolution,59, 386–398. doi: 10.1016/j.ympev.2011.02.011
Xiang, X., Xi, Y. L., Zhang, J. Y., Ma, Q., & Wen, X. (2010). Effects of temperature on survival, reproduction, and morphotype in offspring of two Brachionus calyciflorus (Rotifera) morphotypes. Journal of Freshwater Ecology, 25 , 9–18. doi: 10.1080/02705060.2010.9664352
Yang, C., Gao, Q., Liu, C., Wang, L., & Zhou, Z. (2017). The transcriptional response of the Pacific oyster Crassostrea gigasagainst acute heat stress. Fish and Shellfish Immunology ,68 , 132–143. doi: 10.1016/j.fsi.2017.07.016
Yu, G., Wang, L., Han, Y., & He, Q. (2012). ClusterProfiler: an R package for comparing biological themes among gene clusters.OMICS: A Journal of Integrative Biology , 16 (5), 284–287. doi: 10.1089/omi.2011.0118
Zhang, W., Lemmen, K. D., Zhou L., Papakostas S., & Declerck S. A. J. (2019). Patterns of differentiation in the life history and demography of four recently described species of the Brachionus calycifloruscryptic species complex. Freshwater Biology , 64 , 1994–2005. doi:10.1111/fwb.13388
Zhang, Y., Zhou, A., Xi, Y. L., Sun, Q., Ning, L. F., Xie, P., … Xiang, X. L. (2017). Temporal patterns and processes of genetic differentiation of the Brachionus calyciflorus  (Rotifera) complex in a subtropical shallow lake. Hydrobiologia, 807 , 313–331. doi: 10.1007/s10750-017-3407-9
Zuur, A. F., Leno, E. N., Walker, N. J., Saveliev, A. A., & Smith, G. M. (2009). Mixed effects models and extensions in ecology with R . New York, NY: Springer.