Long-distance migrations by marine fish have long fascinated scientists, but are difficult to track by visual surveys. Here, we propose a new method to easily and precisely track such migrations using stable nitrogen isotopic composition at the base of the food web (δ¹⁵N_Base), which can be estimated by using compound-specific isotope analysis. δ¹⁵N_Base exclusively reflects the δ¹⁵N of nitrate in the ocean at a regional scale and is not affected by the trophic position of sampled organisms. We initially constructed a δ¹⁵N_Base isoscape in the northern North Pacific, and determined retrospective δ¹⁵N_Base values of chum salmon (Oncorhynchus keta) from their vertebral centra. Then, we estimated the migration routes of chum salmon during their skeletal growth by using a state-space model. Our isotope tracking method successfully reproduced a known chum salmon migration route between the Okhotsk and Bering seas, and indicates the presence of a novel migration route to the eastern Bering Sea Shelf during a later growth stage.