Abstract
Several factors influence the degree of gene reuse during repeated
adaptation, offering insights into how evolution is constrained at the
genomic level. Although numerous studies have identified signatures of
genomic repeatability in adaptive evolution, there is a lack of
synthesis regarding the statistical tests used to quantify gene reuse
across lineages. In this review, we survey published studies to (i)
compile a comprehensive list of statistical indices available for
quantifying gene reuse during adaptation and (ii) compare patterns of
the degree of gene reuse across 120 taxa and four trait categories. Our
analysis reveals that currently gene reuse studies are biased in focal
species and traits commonly studied. Importantly, relatively few genomic
loci contribute to repeatability and this variability is context
dependent. By summarizing currently available indices to quantify gene
reuse, we propose a straightforward methodological framework for
designing studies that quantify gene reuse during repeated adaptation.
While this review advances our understanding of the degree of gene
reuse, we emphasize the need for broader and more inclusive research to
uncover the factors driving variability in gene reuse during adaptive
evolution.