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Novel characteristics of Chinese NADC34-like PRRRSV during 2020-2021
  • +14
  • Hu Xu,
  • Chao Li,
  • Wansheng Li,
  • Jing Zhao,
  • Bangjun Gong,
  • Qi Sun,
  • Yandong Tang,
  • Lirun Xiang,
  • Chaoliang Leng,
  • Jinmei Peng,
  • Qian Wang,
  • Fandan Meng,
  • Ying Yu,
  • Tongqing An,
  • Xuehui Cai,
  • Zhi-Jun Tian,
  • HongLiang Zhang
Hu Xu
Chinese Academy of Agricultural Sciences Harbin Veterinary Research Institute

Corresponding Author:xuhu1995@foxmail.com

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Chao Li
Chinese Academy of Agricultural Sciences Harbin Veterinary Research Institute
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Wansheng Li
Chinese Academy of Agricultural Sciences Harbin Veterinary Research Institute
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Jing Zhao
Chinese Academy of Agricultural Sciences Harbin Veterinary Research Institute
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Bangjun Gong
Chinese Academy of Agricultural Sciences Harbin Veterinary Research Institute
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Qi Sun
Chinese Academy of Agricultural Sciences Harbin Veterinary Research Institute
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Yandong Tang
Chinese Academy of Agricultural Sciences Harbin Veterinary Research Institute
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Lirun Xiang
Chinese Academy of Agricultural Sciences Harbin Veterinary Research Institute
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Chaoliang Leng
Nanyang Normal University Rothamsted Research Joint Laboratory of Insect Biology
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Jinmei Peng
Chinese Academy of Agricultural Sciences Harbin Veterinary Research Institute
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Qian Wang
Chinese Academy of Agricultural Sciences Harbin Veterinary Research Institute
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Fandan Meng
Chinese Academy of Agricultural Sciences Harbin Veterinary Research Institute
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Ying Yu
Qingdao Agricultural University
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Tongqing An
Chinese Academy of Agricultural Sciences Harbin Veterinary Research Institute
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Xuehui Cai
Chinese Academy of Agricultural Sciences Harbin Veterinary Research Institute
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Zhi-Jun Tian
Chinese Academy of Agricultural Sciences Harbin Veterinary Research Institute
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HongLiang Zhang
Chinese Academy of Agricultural Sciences Harbin Veterinary Research Institute
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Abstract

NADC34-like PRRSV strains were first detected in China in 2017, with epidemic potential. In this study, the phylogenetic, epidemic, and recombinant properties of NADC34-like PRRSV in China were evaluated comprehensively. From 2020 to October 2021, 82 NADC34-like PRRSV isolates were obtained from 433 PRRSV-positive clinical samples. These strains accounted for 11.5% and 28.6% of positives in 2020 and 2021, respectively, and have spread to eight provinces. We selected 15 samples for whole-genome sequencing, revealing genome lengths of 15,009 to 15,113 nt. Phylogenetic analysis revealed that Chinese NADC34-like strains cluster with American sublineage 1.5 strains and do not form an independent branch. Recombination analysis revealed that six of fifteen complete genome sequences derived from recombination between NADC34-like and NADC30-like or HP-PRRSV; they all recombined with local strains in China, exhibiting a complex recombination pattern. Partial Nsp2 sequence alignment showed that nine of fifteen isolates have a continuous 100-aa deletion (similar to IA/2014/NADC34); other isolates have a 131-aa discontinuity deletion (similar to NADC30). Five of them also have additional amino acid deletions, all of which are reported for the first time here. In the last two years, NADC34-like PRRSV has become one of the main epidemic strains in some areas of China; it has changed significantly, its homology has decreased significantly, and it has undergone complex recombination with local Chinese strains. These results are of great significance for understanding the current epidemic situation of PRRSV in China.
22 Dec 2021Submitted to Transboundary and Emerging Diseases
22 Dec 2021Submission Checks Completed
22 Dec 2021Assigned to Editor
26 Dec 2021Reviewer(s) Assigned
08 Jan 2022Review(s) Completed, Editorial Evaluation Pending
09 Jan 2022Editorial Decision: Revise Minor
13 Jan 20221st Revision Received
13 Jan 2022Submission Checks Completed
13 Jan 2022Assigned to Editor
13 Jan 2022Reviewer(s) Assigned
23 Jan 2022Review(s) Completed, Editorial Evaluation Pending
25 Jan 2022Editorial Decision: Accept